Browse Element(s) Details


Os.1131.2.S1_x_at

Description gb:NM_185795.1
DB_XREF= gi:34898675
GEN=P0676F10.27
TID=Os.1131.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.1131 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative peroxidase (P0676F10.27), mRNA.
PROD=putative peroxidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1635011/11Peroxidase 11 precursor, putative, expressed
LOC_Os03g320501/11Peroxidase 2 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16320NANA6+9297392..9303352retrotransposon protein, putative, unclassified
LOC_Os06g16330Os.20348.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16330Os.52743.1.S1_at11/116+9314992..9322904BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os06g16340OsAffx.15456.1.S1_at11/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.28592.1.S1_at2/116+9323263..9324420hypothetical protein
LOC_Os06g16340OsAffx.12284.1.S1_x_at1/116+9323263..9324420hypothetical protein
LOC_Os06g16350Os.1131.1.S1_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16350Os.1131.2.S1_x_at11/116+9325054..9327207Peroxidase 11 precursor, putative, expressed
LOC_Os06g16360OsAffx.15457.1.S1_at11/116+9332214..9332864hypothetical protein
LOC_Os06g16370Os.1189.1.S1_at11/116+9335377..9337570Hd1, putative, expressed
LOC_Os06g16380NANA6+9348328..9349580hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009624biological_processresponse to nematode
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.1131.2.S1_x_at--148--5311Chr06:9326174..9326198 (25 bp)
GAAGGCAAGCCTGGACCTAGCAAAC
LOC_Os06g16350
Os.1131.2.S1_x_at--740--4291Chr06:9326114..9326138 (25 bp)
CCTCATTGCCAAGTTCTGGGAGAAG
LOC_Os06g16350
Os.1131.2.S1_x_at--986--2871Chr06:9326092..9326116 (25 bp)
AAGGGCCTCGATGCCACTGACATGG
LOC_Os06g16350
Os.1131.2.S1_x_at--325--1951Chr06:9326079..9326101 (23 bp)
ACTGACATGGTAGCCCTTGTCGGAT
LOC_Os06g16350
Os.1131.2.S1_x_at--126--10711Chr06:9325649..9326085 (25 bp)
TTGTCGGATCCCACACAATCGGATT
LOC_Os06g16350
Os.1131.2.S1_x_at--286--7772Chr06:9325619..9325643 (25 bp)
GGTGCGCCAACTTCCGGGACAGGAT
LOC_Os06g16350
Os.1131.2.S1_x_at--495--7631Chr06:9325604..9325628 (25 bp)
GGGACAGGATCTACGGCGACTACGA
LOC_Os06g16350
Os.1131.2.S1_x_at--1131--1291Chr06:9325580..9325604 (25 bp)
AGATGACGACCAAGTACAGCCCGAT
LOC_Os06g16350
Os.1131.2.S1_x_at--621--1851Chr06:9325502..9325526 (25 bp)
ACGACAACATCAGCGCCATGGACAG
LOC_Os06g16350
Os.1131.2.S1_x_at--655--2151Chr06:9325364..9325388 (25 bp)
ACACCGTCAGCAAGTACTGGGCCGA
LOC_Os06g16350
Os.1131.2.S1_x_at--617--3431Chr06:9325320..9325344 (25 bp)
CAGTTCTCCGACTCCATGGTCAAGA
LOC_Os06g16350
Target Sequence 
GAAGGCAAGCCTGGACCTAGCAAACAGGGACATTCCCACTGCTCAACAGGGCCTTGTCACCCTCATTGCCAAGTTCTGGG
AGAAGGGCCTCGATGCCACTGACATGGTAGCCCTTGTCGGATCCCACACAATCGGATTCGCCCGGTGCGCCAACTTCCGG
GACAGGATCTACGGCGACTACGAGATGACGACCAAGTACAGCCCGATCTCCCAGCCCTACCTGAGCAAGCTCAAGGACAT
CTGCCCCCTGGACGGCGGCGACGACAACATCAGCGCCATGGACAGCCACACCGCCGCCGCCTTCGACAACGCCTACTTCG
GGACCCTCGTCAACGGCGAGGGCCTCCTCAACTCCGACCAGGAGATGTGGTCCAGCGTCCTCGGCTACTCCACGGCCGAC
ACCGTCAGCAAGTACTGGGCCGACGCCGACGCCTTCTTCAAGCAGTTCTCCGACTCCATGGTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.1131.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis