Browse Element(s) Details


Os.11334.1.S1_x_at

Description gb:AK119760.1
DB_XREF= gi:37989383
TID=Os.11334.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023127H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G02, full insert sequence.
FL= gb:AK119760.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2509011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g25070Os.48082.1.S1_at11/119+14991918..14993887WRKY DNA binding domain containing protein, expressed
LOC_Os09g25080OsAffx.6390.1.S1_at11/119+15002992..15003484hypothetical protein
LOC_Os09g25090Os.11334.1.S1_x_at11/119+15008141..15009836Protein kinase domain containing protein, expressed
LOC_Os09g25100OsAffx.30829.2.S1_at11/119+15026337..15027688CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os09g25100OsAffx.30829.2.S1_x_at11/119+15026337..15027688CBL-interacting serine/threonine-protein kinase 15, putative, expressed
LOC_Os09g25110NANA9+15030072..15033299transposon protein, putative, unclassified
LOC_Os09g25120NANA9+15033926..15040081transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005829cellular_componentcytosol
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11334.1.S1_x_at--166--4031Chr09:15008986..15009010 (25 bp)
CGTTCCAGCACGAGAACTACGCCAA
LOC_Os09g25090
Os.11334.1.S1_x_at--602--611Chr09:15008837..15008861 (25 bp)
ATGCGCACGCCATGGTTCAAGAAGG
LOC_Os09g25090
Os.11334.1.S1_x_at--520--9711Chr09:15008821..15008845 (25 bp)
TCAAGAAGGGCTTCGTGCCGCCCGT
LOC_Os09g25090
Os.11334.1.S1_x_at--344--1911Chr09:15008711..15008735 (25 bp)
ACGTGCAACGCGTTCCAGCTCATAT
LOC_Os09g25090
Os.11334.1.S1_x_at--617--771Chr09:15008681..15008705 (25 bp)
ATGTCCTCCGGGTTCGACCTGTCGG
LOC_Os09g25090
Os.11334.1.S1_x_at--417--1471Chr09:15008638..15008662 (25 bp)
AGAAGGCCGCCACGGTGTTCACGTC
LOC_Os09g25090
Os.11334.1.S1_x_at--1144--3911Chr09:15008602..15008626 (25 bp)
CGGCCACCGTCATCCAGAAGCTGGA
LOC_Os09g25090
Os.11334.1.S1_x_at--365--531Chr09:15008565..15008589 (25 bp)
ATCGCTGGGTTACAGCGCCACGAGA
LOC_Os09g25090
Os.11334.1.S1_x_at--1060--9271Chr09:15008270..15008294 (25 bp)
TCCGTTCAGCGCGACGTGAAATCTG
LOC_Os09g25090
Os.11334.1.S1_x_at--627--151Chr09:15008237..15008261 (25 bp)
ATTAGCTTTAGCTTCTTTGCTCGCG
LOC_Os09g25090
Os.11334.1.S1_x_at--528--4791Chr09:15008219..15008243 (25 bp)
GCTCGCGGTTATGTACAGGCCAAAT
LOC_Os09g25090
Target Sequence 
CGTTCCAGCACGAGAACTACGCCAAGATGTACCAGAAGATCTTCAAGGCGGAGTACCAGGTGCCGCCGTGGGTGTCCGGC
GACGCGCGCCGCCTCATCGTCCGCCTGCTCGTCGTCGACCCGGCCAAGCGCATCTCCATCCCGGAGATCATGCGCACGCC
ATGGTTCAAGAAGGGCTTCGTGCCGCCCGTCCCCACCTCCCCTGTCTCCCCCAAGAAATGGGAAGAAGACGATGTCCTCC
TCGACGGCGGCGACTCCGGCGCCATGTCGCCCCGGACGTGCAACGCGTTCCAGCTCATATCCTCCATGTCCTCCGGGTTC
GACCTGTCGGGGATGTTCGAGAGCGAGCAGAAGGCCGCCACGGTGTTCACGTCGCGCGCGCCGGCGGCCACCGTCATCCA
GAAGCTGGAGGCCGTGGGGCGATCGCTGGGTTACAGCGCCACGAGAGGGAAAGGGTGGAAGCTGAGGTTGGAGGCGACGG
CGTCCGTTCAGCGCGACGTGAAATCTGTAGGATGTATTAGCTTTAGCTTCTTTGCTCGCGGTTATGTACAGGCCAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11334.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis