Browse Element(s) Details


Os.11335.3.S1_x_at

Description gb:AK102935.1
DB_XREF= gi:32988144
TID=Os.11335.3
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serine acetyltransferase (P0690B02.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114J02, full insert sequence.
FL= gb:AK102935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5226011/11serine O-acetyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed
LOC_Os01g52290Os.32172.1.S1_at11/111+30386111..30387810expressed protein
LOC_Os01g52304Os.35895.1.S1_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52304Os.35895.2.S1_x_at11/111+30389605..30393149NB-ARC domain containing protein, expressed
LOC_Os01g52320OsAffx.910.1.S1_at3/111+30395452..30396978NB-ARC domain containing protein, expressed
LOC_Os01g52320Os.35895.2.S1_x_at1/111+30395452..30396978NB-ARC domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000103biological_processsulfate assimilation
GO:0009970biological_processcellular response to sulfate starvation
GO:0005739cellular_componentmitochondrion
GO:0005829cellular_componentcytosol
GO:0009507cellular_componentchloroplast
GO:0009001molecular_functionserine O-acetyltransferase activity
GO:0016407molecular_functionacetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11335.3.S1_x_at--528--4571Chr01:30370153..30370177 (25 bp)
GCGCGACGATCCTCGGCAATGTCAG
LOC_Os01g52260
Os.11335.3.S1_x_at--767--591Chr01:30370293..30370317 (25 bp)
ATGCCGGGTGAATCCATGGACCACA
LOC_Os01g52260
Os.11335.3.S1_x_at--870--2971Chr01:30370333..30370357 (25 bp)
AATGGTCGGACTACAGCATCTGAGC
LOC_Os01g52260
Os.11335.3.S1_x_at--994--3471Chr01:30370357..30370381 (25 bp)
CAGGACATGGTGTATGCGCTACTAA
LOC_Os01g52260
Os.11335.3.S1_x_at--309--3131Chr01:30370381..30370405 (25 bp)
AATTTTCTCCTTGTTTCGAGCTGTG
LOC_Os01g52260
Os.11335.3.S1_x_at--918--9371Chr01:30370396..30370420 (25 bp)
TCGAGCTGTGCTTGAACTGGTACTA
LOC_Os01g52260
Os.11335.3.S1_x_at--177--5131Chr01:30370455..30370479 (25 bp)
GCACAATGTGTTTCTTTTTTGCTTG
LOC_Os01g52260
Os.11335.3.S1_x_at--198--9771Chr01:30370480..30370504 (25 bp)
TAATGGCTGTAAGCTTTGCTCCGGC
LOC_Os01g52260
Os.11335.3.S1_x_at--693--7351Chr01:30370514..30370538 (25 bp)
GTGAACCGTACTGCACATTGTCGTG
LOC_Os01g52260
Os.11335.3.S1_x_at--415--7171Chr01:30370542..30370566 (25 bp)
GTCTCCGGACACTTGTACTGGATGT
LOC_Os01g52260
Os.11335.3.S1_x_at--861--7971Chr01:30370561..30370585 (25 bp)
GGATGTTCACTTTGTAATTTTGCGA
LOC_Os01g52260
Target Sequence 
GCGCGACGATCCTCGGCAATGTCAGGATCGGCGCCGGGGCCAAGATCGGGGCCGGGTCGCTGGTGCTCATCGACGTGCCG
CCGAGGACCACGGCGGTGGGGAATCCGGCGAGGCTGCTCGGCGGGAAGAAGGGCGACGACATGCCGGGTGAATCCATGGA
CCACACCTCCTTCATCCAGCAATGGTCGGACTACAGCATCTGAGCAGGACATGGTGTATGCGCTACTAAATTTTCTCCTT
GTTTCGAGCTGTGCTTGAACTGGTACTAGTGGTGTTATTACTTAATAACACTACAAGTAATAGCACAATGTGTTTCTTTT
TTGCTTGTAATGGCTGTAAGCTTTGCTCCGGCGAGCTGAAGGTGAACCGTACTGCACATTGTCGTGCTCGTCTCCGGACA
CTTGTACTGGATGTTCACTTTGTAATTTTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11335.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis