Browse Element(s) Details

Os.11409.1.S1_at

Description

gb:AK063523.1
DB_XREF= gi:32973541
TID=Os.11409.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11409 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-H12, full insert sequence.
FL= gb:AK063523.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50900	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50870	Os.53776.1.S1_at	10/11	6	+	30773203..30775617	DNL zinc finger family protein, expressed
LOC_Os06g50880	Os.18869.1.S1_at	11/11	6	+	30775910..30778654	transducin family protein, putative, expressed
LOC_Os06g50890	Os.10989.2.S1_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50890	Os.10989.1.S1_a_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50910	Os.48137.1.A1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.49175.1.S1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.24117.1.A1_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	OsAffx.31869.4.S1_x_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50900	Os.11409.1.S1_at	11/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_x_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50920	Os.53650.1.S1_at	11/11	6	+	30816442..30822355	protein kinase family protein, putative, expressed
LOC_Os06g50930	Os.11287.1.S1_at	11/11	6	+	30822453..30824784	Senescence-associated protein DIN1, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009409	biological_process	response to cold
GO:0045449	biological_process	regulation of transcription
GO:0045941	biological_process	positive regulation of transcription
GO:0005634	cellular_component	nucleus
GO:0003677	molecular_function	DNA binding
GO:0003700	molecular_function	transcription factor activity
GO:0016563	molecular_function	transcriptional activator activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.11409.1.S1_at--177--817	1	Chr06:30799482..30799578 (25 bp)	GGAACACACCCAAGTTCGATGTGGA	LOC_Os06g50900
Os.11409.1.S1_at--280--109	1	Chr06:30799630..30799654 (25 bp)	AGGGCTGCTCCTGTCCACGGTGAGC	LOC_Os06g50900
Os.11409.1.S1_at--437--567	1	Chr06:30799676..30799700 (25 bp)	GACATCCAGCAGTGCGTCGTCAGCT	LOC_Os06g50900
Os.11409.1.S1_at--671--159	1	Chr06:30799697..30799721 (25 bp)	AGCTGCTTCAACGACTTCGGCATGC	LOC_Os06g50900
Os.11409.1.S1_at--412--429	1	Chr06:30799725..30799893 (25 bp)	CCTCCTGCTCCGAGATGCAGAGGGA	LOC_Os06g50900
Os.11409.1.S1_at--753--5	1	Chr06:30800109..30800133 (25 bp)	ATTCGGGAGGCCTTTTTGCAATCCA	LOC_Os06g50900
Os.11409.1.S1_at--1094--669	1	Chr06:30800145..30800169 (25 bp)	GTTCCTCGTAACCATGCAACGCAAT	LOC_Os06g50900
Os.11409.1.S1_at--1002--1047	1	Chr06:30800179..30800203 (25 bp)	TTACATTACATGTGGTTGTGCCCGT	LOC_Os06g50900
Os.11409.1.S1_at--498--1083	1	Chr06:30800194..30800218 (25 bp)	TTGTGCCCGTCTGTCCATGAATCAT	LOC_Os06g50900
Os.11409.1.S1_at--339--355	1	Chr06:30800222..30800246 (25 bp)	CATCAATCAGACTCTTTCTTTCTCT	LOC_Os06g50900
Os.11409.1.S1_at--3--567	1	Chr06:30800231..30800255 (25 bp)	GACTCTTTCTTTCTCTTAACAACTT	LOC_Os06g50900

Target Sequence

GGAACACACCCAAGTTCGATGTGGAGAGGAAGGAGGGGGGCGACACGCGGGTGGAGATCTACTGCGCGGCCAAGCCAGGG
CTGCTCCTGTCCACGGTGAGCACGCTGGAGACGCTGGGCCTCGACATCCAGCAGTGCGTCGTCAGCTGCTTCAACGACTT
CGGCATGCACGCCTCCTGCTCCGAGATGCAGAGGGAGAGGATGAGCGCGGACATGATAAAGCAGGAGCTGTTCAAGAACG
CCGGCTATGGAGGAGGATGCTTGTAGAGAGAGGACACCGAGAGCAGCAGCAATAAAAGTAGCAGCAGCAATGGTAATAGT
GGTGGTAGCAGCAGCAGATCGAGCAGAAAGAAAGAGAGAGGGTTTCAGAGTTCAGTGTTGTTGAGTAGTAGGGCAGGAGA
GGAAAAGGCAGATTCGGGAGGCCTTTTTGCAATCCATCTCCCCCATCGTTCCTCGTAACCATGCAACGCAATACTACTAC
ATTACATTACATGTGGTTGTGCCCGTCTGTCCATGAATCATCATCATCAATCAGACTCTTTCTTTCTCTTAACAACTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis