Browse Element(s) Details

Os.53776.1.S1_at

Description

gb:AK099961.1
DB_XREF= gi:32985170
TID=Os.53776.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53776 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013126G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013126G09, full insert sequence.
FL= gb:AK099961.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g50870	10/11	DNL zinc finger family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g50809	NA	NA	6	+	30747993..30748679	hypothetical protein
LOC_Os06g50818	Os.8311.1.S1_a_at	3/11	6	+	30750239..30751666	hypothetical protein
LOC_Os06g50830	Os.55915.1.S1_at	11/11	6	+	30753647..30757414	bZIP transcription factor family protein, expressed
LOC_Os06g50840	Os.50011.1.S1_at	11/11	6	+	30761492..30767203	zinc finger family protein, putative, expressed
LOC_Os06g50850	OsAffx.16013.1.S1_at	11/11	6	+	30767269..30769458	expressed protein
LOC_Os06g50860	Os.9925.1.S1_at	10/11	6	+	30769704..30772815	expressed protein
LOC_Os06g50870	Os.53776.1.S1_at	10/11	6	+	30773203..30775617	DNL zinc finger family protein, expressed
LOC_Os06g50880	Os.18869.1.S1_at	11/11	6	+	30775910..30778654	transducin family protein, putative, expressed
LOC_Os06g50890	Os.10989.2.S1_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50890	Os.10989.1.S1_a_at	11/11	6	+	30778798..30783597	RNA recognition motif family protein, expressed
LOC_Os06g50910	Os.48137.1.A1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.49175.1.S1_at	11/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	Os.24117.1.A1_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50910	OsAffx.31869.4.S1_x_at	1/11	6	+	30796115..30814785	Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os06g50900	Os.11409.1.S1_at	11/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_at	1/11	6	+	30798420..30800415	expressed protein
LOC_Os06g50900	OsAffx.4432.1.S1_x_at	1/11	6	+	30798420..30800415	expressed protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.53776.1.S1_at--884--919	1	Chr06:30774832..30774856 (25 bp)	TGCCATGGTCGCTCTTCACAAAGTC	LOC_Os06g50870
Os.53776.1.S1_at--1065--215	1	Chr06:30774727..30774751 (25 bp)	ACACTGACGGCACTGTCTTTGTTCA	LOC_Os06g50870
Os.53776.1.S1_at--707--955	1	NONE	TCTTTGTTCAGTGCTGCGGGTGCAA	NONE
Os.53776.1.S1_at--929--477	1	Chr06:30773563..30773587 (25 bp)	GCTGCGGGTGCAACATATTCCATAA	LOC_Os06g50870
Os.53776.1.S1_at--703--561	1	Chr06:30773531..30773555 (25 bp)	GACAACCTGAACCTGTTCCATGAGA	LOC_Os06g50870
Os.53776.1.S1_at--723--859	1	Chr06:30773493..30773517 (25 bp)	TGGTCCAGACTTCCGCTACGAAGGA	LOC_Os06g50870
Os.53776.1.S1_at--575--529	1	Chr06:30773474..30773498 (25 bp)	GAAGGAGATGCACCGTTCAACTATC	LOC_Os06g50870
Os.53776.1.S1_at--182--971	1	Chr06:30773458..30773482 (25 bp)	TCAACTATCTCGACCGTGGCGAGGA	LOC_Os06g50870
Os.53776.1.S1_at--662--881	1	Chr06:30773342..30773366 (25 bp)	TGTTGATCAATCTGGAGGGTGCCTT	LOC_Os06g50870
Os.53776.1.S1_at--651--915	1	Chr06:30773323..30773347 (25 bp)	TGCCTTGAGTTGTTATACCCTGGAA	LOC_Os06g50870
Os.53776.1.S1_at--205--975	1	Chr06:30773268..30773292 (25 bp)	TAATTGTACTCCTAGTGCACACGCT	LOC_Os06g50870

Target Sequence

TGCCATGGTCGCTCTTCACAAAGTCCCCACGGCGGCGGATGCGCGTGGNCTTCACCTGCAATGTGTGCGGGCAGCGAACC
ACGCGCGCCATCAACCCGCACGCCTACACTGACGGCACTGTCTTTGTTCAGTGCTGCGGGTGCAACATATTCCATAAGCT
GGTGGACAACCTGAACCTGTTCCATGAGATGAAATGNTATGTTGGTCCAGACTTCCGCTACGAAGGAGATGCACCGTTCA
ACTATCTCGACCGTGGCGAGGATGGTGACAACATATTTCCAATTCTGTGAAGAAAACCTGACATGGTGCTTCAGTGTGTG
ATGGTTGATGCCAGTATGTAATAAGCATGCATATGTTGATCAATCTGGAGGGTGCCTTGAGTTGTTATACCCTGGAACTT
GTAGTAAATTTCAGATGTATATATAATTAATTGTACTCCTAGTGCACACGCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis