Browse Element(s) Details


Os.55915.1.S1_at

Description gb:AK108991.1
DB_XREF= gi:32994200
TID=Os.55915.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55915 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-G01, full insert sequence.
FL= gb:AK108991.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5083011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g50780OsAffx.28200.1.S1_at10/116+30724257..30731558hypothetical protein
LOC_Os06g50789OsAffx.16009.1.S1_at9/116+30735061..30737132hypothetical protein
LOC_Os06g50789OsAffx.16010.1.S1_at7/116+30735061..30737132hypothetical protein
LOC_Os06g50800NANA6+30739031..30742267transposon protein, putative, unclassified
LOC_Os06g50809NANA6+30747993..30748679hypothetical protein
LOC_Os06g50818Os.8311.1.S1_a_at3/116+30750239..30751666hypothetical protein
LOC_Os06g50830Os.55915.1.S1_at11/116+30753647..30757414bZIP transcription factor family protein, expressed
LOC_Os06g50840Os.50011.1.S1_at11/116+30761492..30767203zinc finger family protein, putative, expressed
LOC_Os06g50850OsAffx.16013.1.S1_at11/116+30767269..30769458expressed protein
LOC_Os06g50860Os.9925.1.S1_at10/116+30769704..30772815expressed protein
LOC_Os06g50870Os.53776.1.S1_at10/116+30773203..30775617DNL zinc finger family protein, expressed
LOC_Os06g50880Os.18869.1.S1_at11/116+30775910..30778654transducin family protein, putative, expressed
LOC_Os06g50890Os.10989.2.S1_at11/116+30778798..30783597RNA recognition motif family protein, expressed
LOC_Os06g50890Os.10989.1.S1_a_at11/116+30778798..30783597RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0009738biological_processabscisic acid mediated signaling
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55915.1.S1_at--44--9897Chr06:30566115..30566139 (25 bp)
TACTTGTTCAACTCGATCAGCATGC
NONE
Os.55915.1.S1_at--989--4037Chr06:30566128..30566152 (25 bp)
CGATCAGCATGCAGTATCCTGTTCA
NONE
Os.55915.1.S1_at--1097--10377Chr06:30566157..30566181 (25 bp)
TTTTCCCCTTCAGCCATTCAGAAAT
NONE
Os.55915.1.S1_at--1059--8137Chr06:30566244..30566268 (25 bp)
GGACAGATGGGCTTGTCTCTTGTCA
NONE
Os.55915.1.S1_at--107--10817Chr06:30566256..30566280 (25 bp)
TTGTCTCTTGTCAGCATTCACCTTA
NONE
Os.55915.1.S1_at--428--137Chr06:30566271..30566295 (25 bp)
ATTCACCTTAGCTTTACCTCTTACT
NONE
Os.55915.1.S1_at--767--1957Chr06:30566387..30566411 (25 bp)
ACTGAAGATGCATGGCCGACTGAAC
NONE
Os.55915.1.S1_at--103--357Chr06:30566478..30566502 (25 bp)
ATAAATATCAGCTCTCACCTTTGTC
NONE
Os.55915.1.S1_at--335--8737Chr06:30566553..30566577 (25 bp)
TGTCATCAAATCAAAGTGGCCGGCT
NONE
Os.55915.1.S1_at--929--1077Chr06:30566567..30566591 (25 bp)
AGTGGCCGGCTTATCGAGAACCTAG
NONE
Os.55915.1.S1_at--1073--4877Chr06:30566591..30566615 (25 bp)
GCTTTGTCTAGAAACTTTGCCTTGA
NONE
Target Sequence 
TACTTGTTCAACTCGATCAGCATGCAGTATCCTGTTCAATTTTTTTCCCCTTCAGCCATTCAGAAATTCAGAAGTGGCTA
TCATGCTTTAATTTTGTTTCAATCAGTAGTAGTATTTGTTATCTTTGAGGGACAGATGGGCTTGTCTCTTGTCAGCATTC
ACCTTAGCTTTACCTCTTACTAGTATATTTTATCACTGAGTGCGTTTATGCTCATAGGGCATATATATCTTATGTTGGAT
ATAAGTTTTTTTTTTTTTGTCTTGTTTAGTTAAACTGAAGATGCATGGCCGACTGAACATGAGAAAAATATCATTTCGTT
TGGAATGTCATGGAAAGCACTTTCTGAATGGCTAACAGGATATAATAAATATCAGCTCTCACCTTTGTCCACTATTGATA
GAAAAGGAAAGGCAAGAAGATTGCCTTAATTAACCTAATTGTCATCAAATCAAAGTGGCCGGCTTATCGAGAACCTAGCT
TTGTCTAGAAACTTTGCCTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55915.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis