Browse Element(s) Details


Os.11466.1.S1_at

Description gb:AK111993.1
DB_XREF= gi:37988656
TID=Os.11466.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11466 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.16 (P0686E09.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-033-D04, full insert sequence.
FL= gb:AK065278.1 gb:AK111993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4303011/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g43030Os.11466.1.S1_at11/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43030Os.46676.1.A1_x_at1/111+24861729..24873532TPR Domain containing protein, expressed
LOC_Os01g43040Os.41257.1.S1_at11/111+24878962..24882427expressed protein
LOC_Os01g43050Os.37641.1.S1_at11/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43050Os.37641.2.S1_x_at10/111+24886177..24895507CENP-C1, putative, expressed
LOC_Os01g43060Os.33198.1.S1_at11/111+24895849..24898383expressed protein
LOC_Os01g43060OsAffx.13489.1.S1_at1/111+24895849..24898383expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11466.1.S1_at--158--1291Chr01:24862194..24862218 (25 bp)
AGATCTCTTCGGTCTCTGGTGATTT
LOC_Os01g43030
Os.11466.1.S1_at--56--6551Chr01:24862174..24862198 (25 bp)
GATTTTCTGAGTTCCAGCTTGTACC
LOC_Os01g43030
Os.11466.1.S1_at--1001--6971Chr01:24862154..24862178 (25 bp)
GTACCTTTCGTTGTCATCTTGTAGA
LOC_Os01g43030
Os.11466.1.S1_at--601--2911Chr01:24862123..24862147 (25 bp)
AAGGATAACCTTTCATCTCCAGTTC
LOC_Os01g43030
Os.11466.1.S1_at--1128--3371Chr01:24862038..24862062 (25 bp)
CAGCGGACCTTGAATTTGTTGCACG
LOC_Os01g43030
Os.11466.1.S1_at--236--4971Chr01:24862018..24862042 (25 bp)
GCACGGTTGGTTTTTTCAGTCGCTC
LOC_Os01g43030
Os.11466.1.S1_at--541--7231Chr01:24862000..24862024 (25 bp)
GTCGCTCTCCTTGGACTGCAAAAAT
LOC_Os01g43030
Os.11466.1.S1_at--732--3711Chr01:24861883..24861907 (25 bp)
CTACCCCTCATTTTGCAACTTTTGA
LOC_Os01g43030
Os.11466.1.S1_at--10--2531Chr01:24861867..24861891 (25 bp)
AACTTTTGATCCTTGGCGCTGTAAA
LOC_Os01g43030
Os.11466.1.S1_at--374--51Chr01:24861822..24861846 (25 bp)
ATTGATATTGTATTCCCCTTGTCCT
LOC_Os01g43030
Os.11466.1.S1_at--588--1731Chr01:24861776..24861800 (25 bp)
ACCATGTGTGTTTCGTGTGTGCAAT
LOC_Os01g43030
Target Sequence 
AGATCTCTTCGGTCTCTGGTGATTTTCTGAGTTCCAGCTTGTACCTTTCGTTGTCATCTTGTAGATGGTGAAAGGATAAC
CTTTCATCTCCAGTTCCCATGAGGCTTTGCCGGGGTTTGCTGCCTGGCTACATCAGGGCGTGACATTCTTTTGAAGCAGC
GGACCTTGAATTTGTTGCACGGTTGGTTTTTTCAGTCGCTCTCCTTGGACTGCAAAAATTTTGGCATAAAACAGGTATAA
TCTCAAAAACTTTTTTTTTTGTGATATCATGAATATGTTCTTTGCAATAGTTGGATGTACTTGGGGTTGCCCTACCCCTC
ATTTTGCAACTTTTGATCCTTGGCGCTGTAAAATAGTTAACTCGTGTGGGACATTGATATTGTATTCCCCTTGTCCTGAC
AAATAATGGCCATTGTTAACCATGTGTGTTTCGTGTGTGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11466.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis