Browse Element(s) Details


Os.11501.1.S1_at

Description gb:AK109438.2
DB_XREF= gi:42821752
TID=Os.11501.1
CNT=141
FEA=FLmRNA
TIER=FL+Stack
STK=37
UG=Os.11501 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-310-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-310-F07, full insert sequence.
FL= gb:AK061766.1 gb:AK109438.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4880011/11fiber protein Fb2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48760NANA5+27860752..27864700expressed protein
LOC_Os05g48770OsAffx.15156.1.S1_at11/115+27867784..27870239expressed protein
LOC_Os05g48770OsAffx.27374.1.S1_x_at2/115+27867784..27870239expressed protein
LOC_Os05g48770Os.17546.4.S1_x_at1/115+27867784..27870239expressed protein
LOC_Os05g48780OsAffx.27373.1.S1_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48780OsAffx.27373.1.S1_s_at4/115+27872837..27873259hypothetical protein
LOC_Os05g48790Os.17546.1.S2_a_at11/115+27875073..27878768expressed protein
LOC_Os05g48790Os.17546.4.S1_x_at10/115+27875073..27878768expressed protein
LOC_Os05g48790OsAffx.27374.1.S1_x_at9/115+27875073..27878768expressed protein
LOC_Os05g48800Os.11501.1.S1_at11/115+27884293..27887656fiber protein Fb2, putative, expressed
LOC_Os05g48810Os.35463.1.S1_at11/115+27889125..27891336DnaJ domain containing protein, expressed
LOC_Os05g48820Os.6086.2.S1_x_at10/115+27892394..27903100DDT domain containing protein, expressed
LOC_Os05g48830OsAffx.15157.1.S1_at11/115+27904880..27905338hypothetical protein
LOC_Os05g48840Os.27874.2.S1_x_at11/115+27906480..27907394expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
GO:0009785biological_processblue light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11501.1.S1_at--814--4971Chr05:27885448..27885472 (25 bp)
GCATCTGTGATAAAAGAGACACCTG
LOC_Os05g48800
Os.11501.1.S1_at--854--2431Chr05:27885437..27885461 (25 bp)
AAAAGAGACACCTGCTCAGCCATGG
LOC_Os05g48800
Os.11501.1.S1_at--458--9091Chr05:27885424..27885449 (25 bp)
TGCTCAGCCATGGGATTCAAGTATT
LOC_Os05g48800
Os.11501.1.S1_at--892--9011Chr05:27884856..27884880 (25 bp)
TGCAAGACCTGCTGCTCACTACTTT
LOC_Os05g48800
Os.11501.1.S1_at--374--1391Chr05:27884852..27884876 (25 bp)
AGACCTGCTGCTCACTACTTTATTT
LOC_Os05g48800
Os.11501.1.S1_at--981--3831Chr05:27884848..27884872 (25 bp)
CTGCTGCTCACTACTTTATTTGGAG
LOC_Os05g48800
Os.11501.1.S1_at--444--211Chr05:27884764..27884788 (25 bp)
ATTTGCATAGATAAGTGCCCGGTCA
LOC_Os05g48800
Os.11501.1.S1_at--941--4951Chr05:27884760..27884784 (25 bp)
GCATAGATAAGTGCCCGGTCAAATT
LOC_Os05g48800
Os.11501.1.S1_at--1035--571Chr05:27884723..27884747 (25 bp)
ATCCATGGCAGATAGGCACGCTTCT
LOC_Os05g48800
Os.11501.1.S1_at--1013--7171Chr05:27884619..27884643 (25 bp)
GTCTGTAATCTGTATCTCCAGTTCC
LOC_Os05g48800
Os.11501.1.S1_at--108--8751Chr05:27884616..27884640 (25 bp)
TGTAATCTGTATCTCCAGTTCCATA
LOC_Os05g48800
Target Sequence 
GCATCTGTGATAAAAGAGACACCTGCTCAGCCATGGGATTCAAGTATTGACTCATCCCTCACAAGGGAAGAAAGGGAACA
GAAACGGAAGCAAGCGAGTGTCAGAGCAACATTTGTGCAAGACCTGCTGCTCACTACTTTATTTGGAGATTAATAAATCA
AGATGAGCCTAAGTAGTCGATAGATGCATGGGTAAATCCTGGTGCATATTTGCATAGATAAGTGCCCGGTCAAATTGCTG
AAGGTAATATCCATGGCAGATAGGCACGCTTCTNGCGGCACCAGGCGTCGTTTCCTCCCGTAAGGTGCAGAGTTGATGTG
GGCACGGGGGCATCTTAAGTGTTATTGTAGCCGGTCTGTAATCTGTATCTCCAGTTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11501.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis