Browse Element(s) Details


Os.11595.1.S1_at

Description gb:AK109546.1
DB_XREF= gi:32994755
TID=Os.11595.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11595 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1070A12.13 (B1070A12.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-E07, full insert sequence.
FL= gb:AK065434.1 gb:AK109546.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5759911/11retrotransposon protein, putative, LINE subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57590OsAffx.23826.1.S1_at11/111+33627675..33629510hypothetical protein
LOC_Os01g57599Os.11595.1.S2_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57599Os.11595.1.S1_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57610Os.36449.1.S1_at11/111+33635296..33637781Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11595.1.S1_at--162--9151Chr01:33630033..33630057 (25 bp)
TGCGACGCAGCTAGGGTTTTGACTT
LOC_Os01g57599
Os.11595.1.S1_at--798--5051Chr01:33630039..33630063 (25 bp)
GCAGCTAGGGTTTTGACTTTTTATT
LOC_Os01g57599
Os.11595.1.S1_at--1114--10791Chr01:33630090..33630114 (25 bp)
TTGTTTTTTGTTTTCATGTGCGGGT
LOC_Os01g57599
Os.11595.1.S1_at--1155--1971Chr01:33630151..33630175 (25 bp)
ACTCTTCTGGACAGACGGGCCAGAG
LOC_Os01g57599
Os.11595.1.S1_at--974--5751Chr01:33630164..33630188 (25 bp)
GACGGGCCAGAGATCCACATGCGAA
LOC_Os01g57599
Os.11595.1.S1_at--561--1271Chr01:33630174..33630198 (25 bp)
AGATCCACATGCGAAAACCACTTTT
LOC_Os01g57599
Os.11595.1.S1_at--628--3311Chr01:33630192..33630216 (25 bp)
CACTTTTGCCCGCACGGAAAAAATG
LOC_Os01g57599
Os.11595.1.S1_at--271--291Chr01:33630224..33630248 (25 bp)
ATAGTGACATTTGTATAGGTGCATG
LOC_Os01g57599
Os.11595.1.S1_at--571--10071Chr01:33630239..33630263 (25 bp)
TAGGTGCATGGAACCAGGCCGTATT
LOC_Os01g57599
Os.11595.1.S1_at--631--8491Chr01:33630247..33630271 (25 bp)
TGGAACCAGGCCGTATTTAGAAAAG
LOC_Os01g57599
Os.11595.1.S1_at--366--2171Chr01:33630275..33630299 (25 bp)
ACACGTACGATCACTCTTCAGAGGT
LOC_Os01g57599
Target Sequence 
TGCGACGCAGCTAGGGTTTTGACTTTTTATTTTTTTTGCAATATTTACTTTTCTTTTTTGTTTTTTGTTTTCATGTGCGG
GTGCACCACCCGTAGAAAAAAAAATTGGATTTTTACAGACTCTTCTGGACAGACGGGCCAGAGATCCACATGCGAAAACC
ACTTTTGCCCGCACGGAAAAAATGTATTTTTATAGTGACATTTGTATAGGTGCATGGAACCAGGCCGTATTTAGAAAAGA
AAACACGTACGATCACTCTTCAGAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11595.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis