Browse Element(s) Details


Os.11652.1.S1_at

Description gb:AK120066.1
DB_XREF= gi:37989689
TID=Os.11652.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11652 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002C14, full insert sequence.
FL= gb:AK120066.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1523011/11heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15220NANA8+9207003..9211450retrotransposon protein, putative, unclassified
LOC_Os08g15230Os.11652.1.S1_at11/118+9217863..9221767heat shock protein, putative, expressed
LOC_Os08g15240OsAffx.32220.1.S1_s_at10/118+9236596..9238516ribosomal protein S15 containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11652.1.S1_at--928--951Chr08:9218425..9218449 (25 bp)
AGGACTGGGCCGAGAAAGTGCTCAA
LOC_Os08g15230
Os.11652.1.S1_at--91--4071Chr08:9218398..9218422 (25 bp)
CGAGCATTGAGCGATTGTGGCACAA
LOC_Os08g15230
Os.11652.1.S1_at--13--8691Chr08:9218373..9218397 (25 bp)
TGTGAAACATGATAGCGGGCGCTCT
LOC_Os08g15230
Os.11652.1.S1_at--123--311Chr08:9218362..9218386 (25 bp)
ATAGCGGGCGCTCTATCATTCGTCT
LOC_Os08g15230
Os.11652.1.S1_at--337--431Chr08:9218348..9218372 (25 bp)
ATCATTCGTCTTACAGCAGTTGCAG
LOC_Os08g15230
Os.11652.1.S1_at--544--5031Chr08:9218333..9218357 (25 bp)
GCAGTTGCAGCCAAGGCATTGCCAA
LOC_Os08g15230
Os.11652.1.S1_at--219--9971Chr08:9218284..9218308 (25 bp)
TACCGGTGGCGGTAACGATCGCCAT
LOC_Os08g15230
Os.11652.1.S1_at--494--5511Chr08:9218190..9218214 (25 bp)
GAACAACTCCCTGTTATAAGCTAGG
LOC_Os08g15230
Os.11652.1.S1_at--1074--7631Chr08:9218166..9218190 (25 bp)
GGGAGGTTACTATCTGAAGCACATA
LOC_Os08g15230
Os.11652.1.S1_at--209--7651Chr08:9218134..9218158 (25 bp)
GGGAGAAATGTCCATTGACCACCAA
LOC_Os08g15230
Os.11652.1.S1_at--650--9691Chr08:9217912..9217936 (25 bp)
TCACTTCTTGTAATGCATGAGCCAT
LOC_Os08g15230
Target Sequence 
AGGACTGGGCCGAGAAAGTGCTCAAGCCGAGCATTGAGCGATTGTGGCACAATGTGAAACATGATAGCGGGCGCTCTATC
ATTCGTCTTACAGCAGTTGCAGCCAAGGCATTGCCAAGGTGGGGAGGGGGCAGGGAAGGGCTACCGGTGGCGGTAACGAT
CGCCATTGATGGCATGTAGAGAGGGAACTGGGGGGAGATAAATTCTTTGTATGGTAGATATGTAAATATTGGGGAGAACA
ACTCCCTGTTATAAGCTAGGGGAGGTTACTATCTGAAGCACATAGGAGGGAGGGAGAAATGTCCATTGACCACCAAATAG
GCATGGAGGTTATAGATCTTATAACACCCAAATATGATCTATAGTTTTGATATATTTTATANCNNGTGTTGATTGAAACA
AAAAAAAGGTTTTCTTTTGCTTCTTCCTAATGTTGCNAGGATTGNTCGGTGTAGAGGAAGNNNNNTAAATAATGATATTG
TGCANTAATTTTCTTGGCCTGGAACCAANTGTGCTCAANTCACTTCTTGTAATGCATGAGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11652.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis