Browse Element(s) Details


OsAffx.29214.1.S1_at

Description tigr:9636.m01524
TID=OsAffx.29214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to protein at2g18990
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1520411/11UPF0071 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15220NANA8+9207003..9211450retrotransposon protein, putative, unclassified
LOC_Os08g15230Os.11652.1.S1_at11/118+9217863..9221767heat shock protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29214.1.S1_at--881--3912Chr08:9185772..9185860 (25 bp)
CTGGCCCTGCAAGGTGTGGATCTCG
LOC_Os08g15204
OsAffx.29214.1.S1_at--222--8472Chr08:9185773..9185931 (25 bp)
TGGCCCTGCAAGGTGTGGATCTCGT
LOC_Os08g15204
OsAffx.29214.1.S1_at--265--4191Chr08:9185776..9185934 (25 bp)
CCCTGCAAGGTGTGGATCTCGTGGA
LOC_Os08g15204
OsAffx.29214.1.S1_at--1--4291Chr08:9185631..9185935 (25 bp)
CCTGCAAGGTGTGGATCTCGTGGAA
LOC_Os08g15204
OsAffx.29214.1.S1_at--468--8991Chr08:9185917..9185937 (21 bp)
TGCAAGGTGTGGATCTCGTGGAAAC
LOC_Os08g15204
OsAffx.29214.1.S1_at--924--3211Chr08:9185917..9185939 (23 bp)
CAAGGTGTGGATCTCGTGGAAACAT
LOC_Os08g15204
OsAffx.29214.1.S1_at--974--7731Chr08:9185918..9185942 (25 bp)
GGTGTGGATCTCGTGGAAACATACA
LOC_Os08g15204
OsAffx.29214.1.S1_at--477--7512Chr09:20591010..20591478 (25 bp)
GTGGATCTCGTGGAAACATACATTT
NONE
OsAffx.29214.1.S1_at--490--6411Chr08:9185924..9185948 (25 bp)
GATCTCGTGGAAACATACATTTGGT
LOC_Os08g15204
OsAffx.29214.1.S1_at--176--9331Chr08:9185926..9185950 (25 bp)
TCTCGTGGAAACATACATTTGGTTT
LOC_Os08g15204
OsAffx.29214.1.S1_at--729--5531Chr08:9185933..9185957 (25 bp)
GAAACATACATTTGGTTTCAATGCT
LOC_Os08g15204
Target Sequence 
CTGGCCCTGCAAGGTGTGGATCTCGTGGAAACATACATTTGGTTTCAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis