Browse Element(s) Details


Os.49363.2.S1_at

Description gb:AK065954.1
DB_XREF= gi:32975972
TID=Os.49363.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49363 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117C13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013044J02, full insert sequence.
FL= gb:AK065954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g151491/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g398401/11Lipoxygenase 7, chloroplast precursor, putative, expressed
LOC_Os03g034301/11CBS domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15100OsAffx.31069.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15100Os.53479.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15110NANA8+9148450..9149215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15120NANA8+9149954..9154445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.26999.1.A1_at3/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130OsAffx.15708.1.S1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.49936.2.A1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009813biological_processflavonoid biosynthesis
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0019748biological_processsecondary metabolism
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045431molecular_functionflavonol synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49363.2.S1_at--1080--8231Chr03:31048883..31048907 (25 bp)
GGCACAAGTTTGTGCTGCTCCTCTG
NONE
Os.49363.2.S1_at--189--9111Chr03:31048898..31048922 (25 bp)
TGCTCCTCTGCTAATCGCATGAGTA
NONE
Os.49363.2.S1_at--12--331Chr03:31049001..31049025 (25 bp)
ATACTACTCTCCGTGTTTTTATAGA
NONE
Os.49363.2.S1_at--115--10051Chr03:31049022..31049046 (25 bp)
TAGATAACGCTATTCACTTTTAAAT
NONE
Os.49363.2.S1_at--25--434Chr11:25898038..25898259 (25 bp)
ATCATTTATCTATCTACTACTACTT
NONE
Os.49363.2.S1_at--180--983110Chr12:23965434..23965457 (24 bp)
TAAATAAGAGGTGCTTCCATCGTCC
NONE
Os.49363.2.S1_at--197--11520Chr12:3682881..3682905 (25 bp)
AGTCCGAGAGACAAACCGTTTAATG
NONE
Os.49363.2.S1_at--828--24119Chr12:3682946..3682970 (25 bp)
AAAAAATCTGATTTCCCTGGAAGAG
NONE
Os.49363.2.S1_at--376--106521Chr12:3682958..3682982 (25 bp)
TTCCCTGGAAGAGATCCGATCTGTA
NONE
Os.49363.2.S1_at--265--24117Chr10:18912831..18912855 (25 bp)
AAACACTTCTCTAGGTGCTTCTGTC
NONE
Os.49363.2.S1_at--210--73317Chr10:18912845..18912869 (25 bp)
GTGCTTCTGTCGTCCGTCAAAAAAC
NONE
Target Sequence 
GGCACAAGTTTGTGCTGCTCCTCTGCTAATCGCATGAGTAGGAGCTAGCATAAATAGAAGAAAATAAAAAAAAAGAGAAA
ATTAGAAAGTGAGAAAGAAATAAATAAAGAAGTAAAAAATACTACTCTCCGTGTTTTTATAGATAACGCTATTCACTTTT
AAATATCACATTTGATCATTTATCTATCTACTACTACTTAAAAAAATAAATAAGAGGTGCTTCCATCGTCCGTCAAAAAA
ACCGGGTGAAAGAAAACCGGGCAGAAAAAACCAAGTTTGTCCGATAAAAAAACCGGACGAAAAAAAAAAAAAGTCCGATC
CAAAAAAAAGTGAAAAAAAAACCGGGCGAAAAAAACACCCGTCCCTGGCAAAAAAACACCCGATCCCTTAAAAAGGGAAA
AAAAAGTCCGAGAGACAAACCGTTTAATGAATAAAAAAAGCGAAAAAAAAAGAGTCCGATTCCCTGGAGAAAAAAAATCT
GATTTCCCTGGAAGAGATCCGATCTGTATTGGATTGGAGAAAAGAAAAAAAACACTTCTCTAGGTGCTTCTGTCGTCCGT
CAAAAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49363.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis