Browse Element(s) Details


Os.12211.1.S1_at

Description gb:CB678836
DB_XREF= gi:29682561
DB_XREF=OSJNEf01I18.f
CLONE=OSJNEf01I18
TID=Os.12211.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12211 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_175576.1 (A.thaliana) epsilon subunit of mitochondrial F1-ATPase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1517010/11ATP synthase epsilon chain, mitochondrial, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15100OsAffx.31069.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15100Os.53479.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15110NANA8+9148450..9149215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15120NANA8+9149954..9154445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.26999.1.A1_at3/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130OsAffx.15708.1.S1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.49936.2.A1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006754biological_processATP biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0046933molecular_functionhydrogen-transporting ATP synthase activity, rotational mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12211.1.S1_at--832--971NONE
AGGAGAAGCCGACTGTCCGCACAGA
NONE
Os.12211.1.S1_at--295--3891Chr08:9171253..9171277 (25 bp)
CTGTCCGCACAGATGATGAATAAAC
LOC_Os08g15170
Os.12211.1.S1_at--111--6331Chr08:9171239..9171263 (25 bp)
GATGAATAAACATTTGGTGCCATGG
LOC_Os08g15170
Os.12211.1.S1_at--357--7791Chr08:9171224..9171248 (25 bp)
GGTGCCATGGTGACATAGTTCTTCC
LOC_Os08g15170
Os.12211.1.S1_at--868--8611Chr08:9171217..9171241 (25 bp)
TGGTGACATAGTTCTTCCTACAGAT
LOC_Os08g15170
Os.12211.1.S1_at--785--2391Chr08:9171187..9171211 (25 bp)
AAAAATGTTCTTGCCTTTCTTGCGA
LOC_Os08g15170
Os.12211.1.S1_at--737--10551Chr08:9171171..9171195 (25 bp)
TTCTTGCGAGCCGTTGTACCTGAAA
LOC_Os08g15170
Os.12211.1.S1_at--998--6971Chr08:9171156..9171180 (25 bp)
GTACCTGAAACTTGCTGTTATCTGG
LOC_Os08g15170
Os.12211.1.S1_at--795--3631Chr08:9171146..9171170 (25 bp)
CTTGCTGTTATCTGGCTGGATTTTG
LOC_Os08g15170
Os.12211.1.S1_at--1010--7931Chr08:9171129..9171153 (25 bp)
GGATTTTGTGGTCAACGCTGAAGAA
LOC_Os08g15170
Os.12211.1.S1_at--218--5231Chr08:9171107..9171131 (25 bp)
GAATAAATTCTTTCTGTGACAGTGG
LOC_Os08g15170
Target Sequence 
AGGAGAAGCCGACTGTCCGCACAGATGATGAATAAACATTTGGTGCCATGGTGACATAGTTCTTCCTACAGATGTTTCAA
AAATGTTCTTGCCTTTCTTGCGAGCCGTTGTACCTGAAACTTGCTGTTATCTGGCTGGATTTTGTGGTCAACGCTGAAGA
ATAAATTCTTTCTGTGACAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis