Browse Element(s) Details


OsAffx.5823.1.S1_at

Description tigr:9636.m01522
TID=OsAffx.5823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=95993 60S acidic ribosomal protein p2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1518011/1160s Acidic ribosomal protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15120NANA8+9149954..9154445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.26999.1.A1_at3/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130OsAffx.15708.1.S1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.49936.2.A1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006414biological_processtranslational elongation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5823.1.S1_at--612--4911Chr08:9175610..9175634 (25 bp)
GCTTCGTCGTGCGTGGCTATGCCAG
LOC_Os08g15180
OsAffx.5823.1.S1_at--138--4871Chr08:9175595..9175619 (25 bp)
GCTATGCCAGGGAAACGACGGTCTC
LOC_Os08g15180
OsAffx.5823.1.S1_at--15--5551Chr08:9175585..9175608 (24 bp)
GAAACGACGGTCTCCTGCTTTGGTT
LOC_Os08g15180
OsAffx.5823.1.S1_at--787--9471Chr08:9175220..9175598 (25 bp)
TCTCCTGCTTTGGTTAGGTTTTCGA
LOC_Os08g15180
OsAffx.5823.1.S1_at--459--1011Chr08:9175205..9175229 (25 bp)
AGGTTTTCGACCGATTTTCTCATCG
LOC_Os08g15180
OsAffx.5823.1.S1_at--725--171Chr08:9175192..9175216 (25 bp)
ATTTTCTCATCGTCGTCGATTTCGA
LOC_Os08g15180
OsAffx.5823.1.S1_at--76--7211Chr08:9175181..9175205 (25 bp)
GTCGTCGATTTCGAATTCCACCGAA
LOC_Os08g15180
OsAffx.5823.1.S1_at--1155--71Chr08:9175167..9175191 (25 bp)
ATTCCACCGAATCGAGATCACCATC
LOC_Os08g15180
OsAffx.5823.1.S1_at--56--6451Chr08:9175152..9175176 (25 bp)
GATCACCATCACCATGAGGTTCGTG
LOC_Os08g15180
OsAffx.5823.1.S1_at--1094--4631Chr08:9175124..9175148 (25 bp)
GCGTACCTGATGGCCTACATCGGCG
LOC_Os08g15180
OsAffx.5823.1.S1_at--462--5911Chr08:9174983..9175007 (25 bp)
GAGCTCATCGCAGCCGGGAGGGAGA
LOC_Os08g15180
Target Sequence 
GCTTCGTCGTGCGTGGCTATGCCAGGGAAACGACGGTCTCCTGCTTTGGTTAGGTTTTCGACCGATTTTCTCATCGTCGT
CGATTTCGAATTCCACCGAATCGAGATCACCATCACCATGAGGTTCGTGTCGGCGTACCTGATGGCCTACATCGGCGGCA
ACGAGAGCCCGAGCAAGGACGACGTGCGCGCCATCCTCGGCTCCGTCGGCGCCGACGTCGACGAGGCCAAGCTCGACCTC
CTCTTCGAGGAGATCGCCGGCAAGGACATCCCCGAGCTCATCGCAGCCGGGAGGGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis