Browse Element(s) Details


Os.55007.1.S1_at

Description gb:AK107302.1
DB_XREF= gi:32992511
TID=Os.55007.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-126-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-126-C10, full insert sequence.
FL= gb:AK107302.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g151492/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15100OsAffx.31069.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15100Os.53479.1.S1_x_at1/118+9144478..9148048retrotransposon protein, putative, unclassified
LOC_Os08g15110NANA8+9148450..9149215retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15120NANA8+9149954..9154445retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.26999.1.A1_at3/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130OsAffx.15708.1.S1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15130Os.49936.2.A1_at1/118+9156079..9158132retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g15149Os.7992.3.S1_x_at4/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.19082.1.S1_at3/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.55007.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149OsAffx.15222.1.S1_at2/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15149Os.49363.2.S1_at1/118+9159625..9168084oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os08g15170Os.12211.1.S1_at10/118+9171008..9174114ATP synthase epsilon chain, mitochondrial, putative, expressed
LOC_Os08g15180OsAffx.5823.1.S1_at11/118+9174819..917566460s Acidic ribosomal protein
LOC_Os08g15190OsAffx.17006.1.S1_at11/118+9177466..9179344expressed protein
LOC_Os08g15204Os.5734.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed
LOC_Os08g15204OsAffx.29214.1.S1_at11/118+9185278..9194914UPF0071 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0045431molecular_functionflavonol synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55007.1.S1_at--458--3011NONE
AATGCTCAACGGTGGGCAATCTCTC
NONE
Os.55007.1.S1_at--1044--2551Chr07:27042057..27042078 (22 bp)
AACGGTGGGCAATCTCTCCGGTATT
NONE
Os.55007.1.S1_at--533--5191Chr07:27042049..27042073 (25 bp)
GCAATCTCTCCGGTATTAGCTGAAG
NONE
Os.55007.1.S1_at--1158--451Chr07:27042046..27042070 (25 bp)
ATCTCTCCGGTATTAGCTGAAGCTA
NONE
Os.55007.1.S1_at--982--4731Chr07:27042031..27042055 (25 bp)
GCTGAAGCTAGGGATTGAAACGGAT
NONE
Os.55007.1.S1_at--879--4751Chr07:27042025..27042049 (25 bp)
GCTAGGGATTGAAACGGATCGGAAA
NONE
Os.55007.1.S1_at--284--57524Chr12:3721614..3721638 (25 bp)
GACGGAACGAATACGGTAGCGAATA
NONE
Os.55007.1.S1_at--431--69729Chr10:14924860..14924884 (25 bp)
GTAGCGAATATTTACCGGTATATAA
NONE
Os.55007.1.S1_at--737--26125Chr10:3489517..3489541 (25 bp)
AACCCCTCAAATTGAGTTTCTTGAT
NONE
Os.55007.1.S1_at--30--33122Chr10:14924893..14924917 (25 bp)
CAAATTGAGTTTCTTGATCAAGGAA
NONE
Os.55007.1.S1_at--1060--60312Chr12:3721688..3721711 (24 bp)
GAGATATCACTTATTATTTTAGTTC
NONE
Target Sequence 
AATGCTCAACGGTGGGCAATCTCTCCGGTATTAGCTGAAGCTAGGGATTGAAACGGATCGGAAACGGACGGAAACTAGCT
TTAACATATTCGTTTTCATATTTTTTTCGGAATCGGAATCGAAAACTCGGATACGGAAATGAAATCGAATATTATCGAAT
ACAGATACGGAGCGAATACGAGACGGAACGAATACGGTAGCGAATATTTACCGGTATATAAAAAACCCCTCAAATTGAGT
TTCTTGATCAAGGAAGAGATATCACTTATTATTTTAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis