Browse Element(s) Details


Os.11658.1.S2_at

Description gb:AB110204.1
DB_XREF= gi:32352205
TID=Os.11658.1
CNT=37
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11658 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, contig of clone: OsNMCP1aSE2Nco-5 and 12FPG031
DEF=Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, contig of clone: OsNMCP1aSE2Nco-5 and 12FPG031.
FL= gb:AB110204.1 gb:AK064051.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4801011/11nuclear matrix constituent protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47980Os.51734.1.S1_x_at11/112+29358233..29359562uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os02g47990OsAffx.25007.2.S1_at1/112+29360332..29361301retrotransposon protein, putative, LINE subclass
LOC_Os02g48000Os.10869.1.S1_at11/112+29367151..29375217TBC domain containing protein, expressed
LOC_Os02g48010Os.11658.1.S2_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.11658.1.S1_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.56102.1.S1_x_at10/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48020OsAffx.24774.1.S1_at11/112+29390261..29390748hypothetical protein
LOC_Os02g48030NANA2+29394455..29395504hypothetical protein
LOC_Os02g48040OsAffx.2994.1.S1_at10/112+29399394..29401166hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11658.1.S2_at--1011--5391Chr02:29377015..29377039 (25 bp)
GAAGCTGGTGACACACATGGCCCTG
LOC_Os02g48010
Os.11658.1.S2_at--299--6331Chr02:29376946..29376970 (25 bp)
GATGCAGCACCAGATGCGATGCCTA
LOC_Os02g48010
Os.11658.1.S2_at--329--6351Chr02:29376934..29376958 (25 bp)
GATGCGATGCCTATGACACCATCAG
LOC_Os02g48010
Os.11658.1.S2_at--449--10111Chr02:29376831..29376855 (25 bp)
TATGGTCTTTCTTCACTACATGACA
LOC_Os02g48010
Os.11658.1.S2_at--399--591Chr02:29376750..29376774 (25 bp)
ATGCCATTCTTGGAACTCTAGGTTG
LOC_Os02g48010
Os.11658.1.S2_at--142--2551Chr02:29376737..29376761 (25 bp)
AACTCTAGGTTGTGTGCTTGGTGAT
LOC_Os02g48010
Os.11658.1.S2_at--17--6771Chr02:29376697..29376721 (25 bp)
GTAGATTTTCCCACTTCAATTATGT
LOC_Os02g48010
Os.11658.1.S2_at--909--5671Chr02:29376640..29376664 (25 bp)
GACATAGCTTTGATGGGCGCTCACA
LOC_Os02g48010
Os.11658.1.S2_at--693--8631Chr02:29376627..29376651 (25 bp)
TGGGCGCTCACAGAAGTTAGCTTTT
LOC_Os02g48010
Os.11658.1.S2_at--44--5971Chr02:29376602..29376626 (25 bp)
GAGAATGTACAATGGCGCGATGCCT
LOC_Os02g48010
Os.11658.1.S2_at--89--8471Chr02:29376590..29376614 (25 bp)
TGGCGCGATGCCTGTAACTGTCAAG
LOC_Os02g48010
Target Sequence 
GAAGCTGGTGACACACATGGCCCTGTAGAGGTCACTAGTGCAGAGGGGGTAGATATTGTGGATGGTATAGATGCAGCACC
AGATGCGATGCCTATGACACCATCAGGAAGTGAACTTGGAGCTGAACAGGATGATGAGGAGGACGATGACTCCGAAAGGC
GGAACCAATCAATTGGGAAAAAGCTATGGTCTTTCTTCACTACATGACAATTGCAGAGGGCTACTGAATAGGTTATTTCT
AGCGTTTCTGTTTTNGATTCATGACATGCCATTCTTGGAACTCTAGGTTGTGTGCTTGGTGATGATGATGATGTACTAGT
AGATTTTCCCACTTCAATTATGTTCTCCCCCTGTAATTGAAATATATTTGTAGTAGACATAGCTTTGATGGGCGCTCACA
GAAGTTAGCTTTTGAGAATGTACAATGGCGCGATGCCTGTAACTGTCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11658.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis