Browse Element(s) Details


Os.11709.1.S1_at

Description gb:AK121261.1
DB_XREF= gi:37990884
TID=Os.11709.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11709 (NCBI UniGene Cluster)
UG_TITLE=Dek1-calpain-like protein mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104H13, full insert sequence.
FL= gb:AK064381.1 gb:AY062272.1 gb:AK072218.1 gb:AK121261.1 gb:AK121875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4797011/11calpain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein
LOC_Os02g47960OsAffx.12543.1.S1_at10/112+29331066..29332463hypothetical protein
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47980Os.51734.1.S1_x_at11/112+29358233..29359562uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os02g47990OsAffx.25007.2.S1_at1/112+29360332..29361301retrotransposon protein, putative, LINE subclass
LOC_Os02g48000Os.10869.1.S1_at11/112+29367151..29375217TBC domain containing protein, expressed
LOC_Os02g48010Os.11658.1.S2_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.11658.1.S1_at11/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed
LOC_Os02g48010Os.56102.1.S1_x_at10/112+29376525..29382642nuclear matrix constituent protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001708biological_processcell fate specification
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11709.1.S1_at--183--9631Chr02:29346593..29346617 (25 bp)
TCAGGTCCAGTCTGTCTTTTTGGAA
LOC_Os02g47970
Os.11709.1.S1_at--43--3231Chr02:29346686..29346710 (25 bp)
CAAGTTGGTCTTCGATTGGTGACTA
LOC_Os02g47970
Os.11709.1.S1_at--829--1051Chr02:29346968..29346992 (25 bp)
AGGTGGCATCTTGTCACTGTGACTA
LOC_Os02g47970
Os.11709.1.S1_at--1153--5371Chr02:29347010..29347034 (25 bp)
GAAGCAACTTCTTTCATAGACGGAG
LOC_Os02g47970
Os.11709.1.S1_at--157--5271Chr02:29347051..29347075 (25 bp)
GAATGCGTTGCCATTGCCTAGAAAT
LOC_Os02g47970
Os.11709.1.S1_at--796--351Chr02:29347074..29347098 (25 bp)
ATAATGGCATCTGGGAACCTGGGAC
LOC_Os02g47970
Os.11709.1.S1_at--952--171Chr02:29347103..29347127 (25 bp)
ATTTGGGTTGGTGCTAGGCCACCCA
LOC_Os02g47970
Os.11709.1.S1_at--1126--2951Chr02:29347126..29347150 (25 bp)
CACGGACTTAGATGCCTTTGGTAGG
LOC_Os02g47970
Os.11709.1.S1_at--545--4871Chr02:29347232..29347256 (25 bp)
GCTATGTTGCATACAGCCATCTGTT
LOC_Os02g47970
Os.11709.1.S1_at--41--491Chr02:29347250..29347274 (25 bp)
ATCTGTTCTGCTGAATATGGCCTTT
LOC_Os02g47970
Os.11709.1.S1_at--641--4451Chr02:29347269..29347293 (25 bp)
GCCTTTTTGATCTTGCTGCTGAGGA
LOC_Os02g47970
Target Sequence 
TCAGGTCCAGTCTGTCTTTTTGGAACAGAATTCCAGAAAAAAGTGTGCTGGGAAATCTTGGTGGCAGGGTCAGAACAGGG
AATGGAAGCTGGCCAAGTTGGTCTTCGATTGGTGACTAAGGGTGAAAGGATGACAACCGTTGCAAAAGAGTGGAATATTG
GTGCATCAAGTATTGCTGATGGCAGGTGGCATCTTGTCACTGTGACTATAGATGCTGATCTAGGTGAAGCAACTTCTTTC
ATAGACGGAGTCTACGATGGATATCAGAATGCGTTGCCATTGCCTAGAAATAATGGCATCTGGGAACCTGGGACAGATAT
TTGGGTTGGTGCTAGGCCACCCACGGACTTAGATGCCTTTGGTAGGTCAGACAGCGAGGGATCAGACTCAAAGATGCAGA
TCATGGATGCTTTTCTATGGGGAAGATGTCTGACTGAAGATGAGGTTGCTATGTTGCATACAGCCATCTGTTCTGCTGAA
TATGGCCTTTTTGATCTTGCTGCTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis