Browse Element(s) Details


Os.47881.1.S1_at

Description gb:AK111003.1
DB_XREF= gi:32996212
TID=Os.47881.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.47881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-F02, full insert sequence.
FL= gb:AK111003.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4793011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47890Os.54767.1.S1_at11/112+29288705..29293635expressed protein
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein
LOC_Os02g47960OsAffx.12543.1.S1_at10/112+29331066..29332463hypothetical protein
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47881.1.S1_at--16--9491Chr02:29315518..29315542 (25 bp)
TCTGACAATCATTCGACAGTGCCTT
LOC_Os02g47930
Os.47881.1.S1_at--957--5471Chr02:29315373..29315397 (25 bp)
GAACTTAGCGTTAAACCTGCACTGG
LOC_Os02g47930
Os.47881.1.S1_at--929--2571Chr02:29315338..29315362 (25 bp)
AACGGCAAATGCTAAATCTTCAGGA
LOC_Os02g47930
Os.47881.1.S1_at--262--5891Chr02:29315308..29315332 (25 bp)
GAGCGTTAAACCTGCAGATGTCAAA
LOC_Os02g47930
Os.47881.1.S1_at--772--2371Chr02:29315286..29315310 (25 bp)
AAACCTGTTCTGACTGTTCAATGAT
LOC_Os02g47930
Os.47881.1.S1_at--1081--1351Chr02:29315246..29315270 (25 bp)
AGAGCAATTCGTGCGCACACTCAAT
LOC_Os02g47930
Os.47881.1.S1_at--676--3071Chr02:29315224..29315248 (25 bp)
AATCATCACACATTTGCACAGGTAT
LOC_Os02g47930
Os.47881.1.S1_at--41--5131Chr02:29315209..29315233 (25 bp)
GCACAGGTATGACTTACTGCAGTAC
LOC_Os02g47930
Os.47881.1.S1_at--188--3851Chr02:29315193..29315217 (25 bp)
CTGCAGTACTTTGTATGCGTTGTAT
LOC_Os02g47930
Os.47881.1.S1_at--865--6151Chr02:29315168..29315192 (25 bp)
GAGGTAGTTTGCTACACTGCACAAA
LOC_Os02g47930
Os.47881.1.S1_at--1033--7471Chr02:29315086..29315110 (25 bp)
GTGTGTGGCACATAACTGATTTGTT
LOC_Os02g47930
Target Sequence 
TCTGACAATCATTCGACAGTGCCTTGAGTTCATCAAATTAAATAGGAGTCAATCCAANCGGGAGGAAAATGGTGAGAAGG
GTAATTCAGGAGATGTTAAAGGTATACTGGAAAAAGTCTTAACAGCAAATGCTAAATCTTCAGGAGAACTTAGCGTTAAA
CCTGCACTGGAAAAAGTCTTAACGGCAAATGCTAAATCTTCAGGAGAACTGAGCGTTAAACCTGCAGATGTCAAACCTGT
TCTGACTGTTCAATGATTATTACTGAAATGTCAGAGCAATTCGTGCGCACACTCAATCATCACACATTTGCACAGGTATG
ACTTACTGCAGTACTTTGTATGCGTTGTATGAGGTAGTTTGCTACACTGCACAAANTGTATGTTCATTCATTCATCCGTT
CTGTATGATGTTATATAGGTCTTTTTATTTGGGTGTGTGGCACATAACTGATTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis