Browse Element(s) Details


Os.56149.1.S1_at

Description gb:AK109446.1
DB_XREF= gi:32994655
TID=Os.56149.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-104-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-104-A09, full insert sequence.
FL= gb:AK109446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4795010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein
LOC_Os02g47960OsAffx.12543.1.S1_at10/112+29331066..29332463hypothetical protein
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56149.1.S1_at--406--6171Chr02:29325170..29325194 (25 bp)
GAGGATCATCCTCCGGAGATGGCAC
LOC_Os02g47950
Os.56149.1.S1_at--1--2791Chr02:29325106..29325130 (25 bp)
AAGAGAGGCTGCAGCACGGTCGACC
LOC_Os02g47950
Os.56149.1.S1_at--360--4091Chr02:29325086..29325110 (25 bp)
CGACCCGGCTGCAGGCGTGAAGAAA
LOC_Os02g47950
Os.56149.1.S1_at--938--8011Chr02:29325056..29325080 (25 bp)
GGAGGAGCTATTTGACGACGACGAT
LOC_Os02g47950
Os.56149.1.S1_at--18--1871Chr02:29325039..29325063 (25 bp)
ACGACGATCTATTCCAAGGCGCATT
LOC_Os02g47950
Os.56149.1.S1_at--1012--2331Chr02:29324965..29324989 (25 bp)
AAAGAGAGGTGCTTCGCCGTCGACG
LOC_Os02g47950
Os.56149.1.S1_at--765--1511Chr02:29324859..29324883 (25 bp)
AGCAGGTGGATCGTCCGGATCAGTT
LOC_Os02g47950
Os.56149.1.S1_at--603--1071Chr02:29324728..29324752 (25 bp)
AGGGACAGTCGCAACATAATTCAGG
LOC_Os02g47950
Os.56149.1.S1_at--496--9731Chr02:29324712..29324736 (25 bp)
TAATTCAGGCGTTGAGCTCGGTTTC
LOC_Os02g47950
Os.56149.1.S1_at--282--3971Chr02:29324694..29324718 (25 bp)
CGGTTTCTGGCTGATGATTGCTCAT
LOC_Os02g47950
Os.56149.1.S1_at--591--9751Chr02:29324661..29324685 (25 bp)
TAATCAATTACATCCTGTTCCGGCC
NONE
Target Sequence 
GAGGATCATCCTCCGGAGATGGCACGGGAGAAGATCATCATCATCGGCGGCGGCGGCGGCGGCCAAGAGAGGCTGCAGCA
CGGTCGACCCGGCTGCAGGCGTGAAGAAACAGCTGGAGGAGCTATTTGACGACGACGATCTATTCCAAGGCGCATTCGGC
GGCGGGATCAACGGAGGCGGCGGCGACGACGAGGAGGGGTGGTGGAAAGAGAGGTGCTTCGCCGTCGACGACGACGACGG
CGGCGTGTGGGAGGCGCTGATCGAGCAAGAGGGGCTCTTCTGGTTCGGGAGCTTCTGGGGCCGGACGACGGAGCAGGTGG
ATCGTCCGGATCAGTTTGGAGACGACGAACATGCCCACCCAGCCTTGAGGTTTCCTCTCGTTCTCGAGAGAGTTTGTGAC
TAAATTAGCTAGAGTACTTAATTTATCAATGCAAGCTTAATTAGGGACAGTCGCAACATAATTCAGGCGTTGAGCTCGGT
TTCTGGCTGATGATTGCTCATTGAGTTCTTAATCAATTACATCCTGTTCCGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis