Browse Element(s) Details


Os.16087.1.S1_at

Description gb:AK058999.1
DB_XREF= gi:32969017
TID=Os.16087.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023002D16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G08, full insert sequence.
FL= gb:AK099074.1 gb:AK058999.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4794010/11Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47900OsAffx.24772.1.S1_x_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900Os.47321.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47900OsAffx.24772.1.S1_at11/112+29297015..29301271SET domain protein SDG117, putative, expressed
LOC_Os02g47910OsAffx.24773.1.S1_at9/112+29304483..29305300hypothetical protein
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein
LOC_Os02g47960OsAffx.12543.1.S1_at10/112+29331066..29332463hypothetical protein
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004400molecular_functionhistidinol-phosphate transaminase activity
GO:0008483molecular_functiontransaminase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16087.1.S1_at--512--7631Chr02:29319987..29320011 (25 bp)
GGGACAGGCTGTACGATCTTCTCAA
LOC_Os02g47940
Os.16087.1.S1_at--256--4411Chr02:29319933..29319957 (25 bp)
GCCACTCTAACTTTATTCTCTGCGA
LOC_Os02g47940
Os.16087.1.S1_at--546--7071Chr02:29319275..29319299 (25 bp)
GTAATGATCCGCCACTATGACAAGA
LOC_Os02g47940
Os.16087.1.S1_at--1118--7391Chr02:29319165..29319189 (25 bp)
GTGATCATCCCATCTGTTTGACGGA
LOC_Os02g47940
Os.16087.1.S1_at--768--2051Chr02:29319129..29319153 (25 bp)
ACTTGCCCGTGGTAGTGCACTAGAT
LOC_Os02g47940
Os.16087.1.S1_at--782--9251Chr02:29319057..29319081 (25 bp)
TCCTCTAGGGTCGATTATGTCTCAA
LOC_Os02g47940
Os.16087.1.S1_at--645--3091Chr02:29319031..29319055 (25 bp)
AATACACTCTTCTGTTTTGACCAGT
LOC_Os02g47940
Os.16087.1.S1_at--218--8931Chr02:29319014..29319038 (25 bp)
TGACCAGTGGCGTTTTGTCCAGCAT
LOC_Os02g47940
Os.16087.1.S1_at--116--6631Chr02:29318983..29319007 (25 bp)
GTTGGTCGACTTGGGTTTCTTCTCA
LOC_Os02g47940
Os.16087.1.S1_at--391--9891Chr02:29318932..29318956 (25 bp)
TACTGCCGTGCCCTGATTGGAATAA
LOC_Os02g47940
Os.16087.1.S1_at--809--8491NONE
TGGCTAGATTGTTTATGCCCCTTCT
NONE
Target Sequence 
GGGACAGGCTGTACGATCTTCTCAAAGAAATACCATTCCTAAAGCCATTTCCCAGCCACTCTAACTTTATTCTCTGCGAG
GTCACATCAGGCAAAGATGCAAAGAAAATAAAGGAAGACCTTGCGAAGATGGGAGTAATGATCCGCCACTATGACAAGAA
GGAACTAAAGGGATATATTCGTATTTCAGTGGGCAAGCCAGAGCATACCGATGCACTAATGAAAGGCCTGAAAGCACTTC
AACTGTGATCATCCCATCTGTTTGACGGAAGCACTGAAGCACTTGCCCGTGGTAGTGCACTAGATGCAGTCTCTCAATGG
AGGTTGCATCAATCTAACACAAATAAGGTGCATCCTCTAGGGTCGATTATGTCTCAATAATACACTCTTCTGTTTTGACC
AGTGGCGTTTTGTCCAGCATTTTTGTGTTGGTCGACTTGGGTTTCTTCTCAAGGTGATTGTTCGAAGCAAGAATTTGTAC
TGCCGTGCCCTGATTGGAATAAATATGAGCGTAAAAGTATGGCAAGTCTACTGGCTAGATTGTTTATGCCCCTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis