Browse Element(s) Details


OsAffx.12543.1.S1_at

Description tigr:9630.m04671
TID=OsAffx.12543.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4796010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g47920OsAffx.12542.1.S1_at11/112+29312762..29314803exonuclease family protein
LOC_Os02g47930Os.47881.1.S1_at11/112+29314620..29317124expressed protein
LOC_Os02g47940Os.16087.1.S1_at10/112+29318842..29322503Histidinol-phosphate aminotransferase, chloroplast precursor, putative, expressed
LOC_Os02g47950Os.56149.1.S1_at10/112+29324661..29325470expressed protein
LOC_Os02g47960OsAffx.12543.1.S1_at10/112+29331066..29332463hypothetical protein
LOC_Os02g47970Os.11709.1.S1_at11/112+29335385..29352022calpain, putative, expressed
LOC_Os02g47970Os.11709.1.S2_at11/112+29335385..29352022calpain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12543.1.S1_at--782--9031Chr02:29331136..29331160 (25 bp)
TGCAGCCGGACTACCAGGGCTCCGT
LOC_Os02g47960
OsAffx.12543.1.S1_at--230--7311Chr02:29331243..29331267 (25 bp)
GTGCTGGTGCTCACCCTGCTGTCCT
LOC_Os02g47960
OsAffx.12543.1.S1_at--411--9131Chr02:29331259..29331283 (25 bp)
TGCTGTCCTGCGTCCTCGGCCGGGT
LOC_Os02g47960
OsAffx.12543.1.S1_at--277--4091NONE
CGACGAGCGGTACGAAAGATATCAA
NONE
OsAffx.12543.1.S1_at--194--2331Chr02:29332366..29332390 (25 bp)
AAAGATATCAACCTCGAAATGGGAC
LOC_Os02g47960
OsAffx.12543.1.S1_at--1065--791Chr02:29332384..29332408 (25 bp)
ATGGGACGTGCGGTGTTGCTATCAA
LOC_Os02g47960
OsAffx.12543.1.S1_at--936--8111Chr02:29332387..29332411 (25 bp)
GGACGTGCGGTGTTGCTATCAAAAT
LOC_Os02g47960
OsAffx.12543.1.S1_at--1046--1891Chr02:29332389..29332413 (25 bp)
ACGTGCGGTGTTGCTATCAAAATCA
LOC_Os02g47960
OsAffx.12543.1.S1_at--356--4671Chr02:29332393..29332417 (25 bp)
GCGGTGTTGCTATCAAAATCAGTGT
LOC_Os02g47960
OsAffx.12543.1.S1_at--532--7411Chr02:29332396..29332420 (25 bp)
GTGTTGCTATCAAAATCAGTGTAGT
LOC_Os02g47960
OsAffx.12543.1.S1_at--390--3071Chr02:29332409..29332433 (25 bp)
AATCAGTGTAGTAGAAGTCCAGGGT
LOC_Os02g47960
Target Sequence 
TGCAGCCGGACTACCAGGGCTCCGTCACCGCCGCCGCCGAGGGGGCGGCGGCGCGGGGCCACGGCGGCGGGGGGTCCATC
GGCACGTTCTTCGCCGTGCTCGCGGCGGTGCTGGTGCTCACCCTGCTGTCCTGCGTCCTCGGCCGGGTGTGCGCGCGCCA
CGCCGACGGGCCCGACGAGCGGTACGAAAGATATCAACCTCGAAATGGGACGTGCGGTGTTGCTATCAAAATCAGTGTAG
TAGAAGTCCAGGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12543.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis