Browse Element(s) Details


Os.11688.1.S1_at

Description gb:AK069737.1
DB_XREF= gi:32979761
TID=Os.11688.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030O19, full insert sequence.
FL= gb:AK069737.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3131011/11circadian clock coupling factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31280OsAffx.25315.1.S1_at11/113+17773209..17774276hypothetical protein
LOC_Os03g31290Os.53722.1.S1_at11/113+17779080..17782606ubiquitin-fusion protein, putative, expressed
LOC_Os03g31300Os.7626.1.S1_at11/113+17787104..17794190Chaperone clpB 1, putative, expressed
LOC_Os03g31310Os.11688.1.S1_at11/113+17794911..17799265circadian clock coupling factor, putative, expressed
LOC_Os03g31320Os.49432.1.S1_at11/113+17805610..17808599RING zinc finger protein, putative, expressed
LOC_Os03g31340OsAffx.3380.1.S1_x_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31340OsAffx.3380.1.S1_at11/113+17814086..17814383Protein transport protein SEC61 gamma subunit, putative
LOC_Os03g31360Os.8013.1.S1_at11/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360Os.12807.2.S1_x_at2/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed
LOC_Os03g31360OsAffx.27508.71.S1_s_at1/113+17819184..17821150Glutelin type-A 3 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11688.1.S1_at--162--7911Chr03:17797923..17797947 (25 bp)
GGTTGGATGCTTATGACGATTCTGT
LOC_Os03g31310
Os.11688.1.S1_at--325--10131Chr03:17797887..17797911 (25 bp)
TATGCCTTAACGGACACATCCTTGG
LOC_Os03g31310
Os.11688.1.S1_at--524--3311Chr03:17797873..17797897 (25 bp)
CACATCCTTGGTTTATGCACTCTGA
LOC_Os03g31310
Os.11688.1.S1_at--789--6351Chr03:17797850..17797874 (25 bp)
GATGCCTGTCTCTGATTCCGAGGAT
LOC_Os03g31310
Os.11688.1.S1_at--975--1051Chr03:17795286..17795310 (25 bp)
AGGTGGCCTTATTCATGACTGGTCT
LOC_Os03g31310
Os.11688.1.S1_at--941--5731Chr03:17795270..17795294 (25 bp)
GACTGGTCTGTGAATCTTGTACAAT
LOC_Os03g31310
Os.11688.1.S1_at--930--2991Chr03:17795248..17795272 (25 bp)
AATGTTGGATCTTGCTTTCTACTAA
LOC_Os03g31310
Os.11688.1.S1_at--693--791Chr03:17795175..17795199 (25 bp)
ATGTGGGATCTTTCTTTCAACTAAT
LOC_Os03g31310
Os.11688.1.S1_at--946--4491Chr03:17795125..17795149 (25 bp)
GCCGTTGTATTATCTGCATTGTTCT
LOC_Os03g31310
Os.11688.1.S1_at--1033--131Chr03:17795085..17795109 (25 bp)
ATTAGAAGGCTCTATGTCACCACTT
LOC_Os03g31310
Os.11688.1.S1_at--783--8671Chr03:17794950..17794974 (25 bp)
TGTGTGCAACACAGCTTCTCTGATA
LOC_Os03g31310
Target Sequence 
GGTTGGATGCTTATGACGATTCTGTTGAGTATTATATATGCCTTAACGGACACATCCTTGGTTTATGCACTCTGATGCCT
GTCTCTGATTCCGAGGATGCAAAGGAGTAGTTATCAAGACTTGAGTCAGGTGGCCTTATTCATGACTGGTCTGTGAATCT
TGTACAATGTTGGATCTTGCTTTCTACTAAGAATCAGTAGCTCGATAAGAAAATGTTGTTTTTCTTGGTGCATGTACAAT
GTGGGATCTTTCTTTCAACTAATAGCCAGCAGCGTAACAAGAAACGTTGCCGTTGTATTATCTGCATTGTTCTTTGTACC
AATAGAACATTAGAAGGCTCTATGTCACCACTTCCTTTTTTATGGGTACCTCATTACAGGTATCTTGTATTGTATCTACA
TGTTTTACATTATCTGACATGGCATGTAGCATTAAGGGACATTCGAGCTGTACAAATTTTGCTTGTGTGCAACACAGCTT
CTCTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis