Browse Element(s) Details


Os.11707.1.A1_at

Description gb:CB656443
DB_XREF= gi:29660168
DB_XREF=OSJNEc10M19.r
CLONE=OSJNEc10M19
TID=Os.11707.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.11707 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568722.1 (A.thaliana) cysteine proteinase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5413011/11Papain family cysteine protease containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54070NANA3+30949559..30949912hypothetical protein
LOC_Os03g54084OsAffx.25710.1.S1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.24622.1.A1_at11/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54084Os.3383.1.S1_a_at10/113+30955132..30964347Phytochrome C, putative, expressed
LOC_Os03g54100Os.14641.1.S1_at7/113+30965240..30967857calcium-activated outward-rectifying potassium channel 5,chloroplast precursor, putative, expressed
LOC_Os03g54114OsAffx.25711.1.S1_at10/113+30970384..30973078hypothetical protein
LOC_Os03g54130Os.51579.1.S1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54130Os.11707.1.A1_at11/113+30973787..30975621Papain family cysteine protease containing protein, expressed
LOC_Os03g54150Os.17640.1.S1_at11/113+30977948..30982102expressed protein
LOC_Os03g54160Os.2348.1.S1_a_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.50429.1.S1_at11/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.1.S1_at10/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54160Os.2348.2.S1_x_at6/113+30982122..30991960Floral homeotic protein APETALA1, putative, expressed
LOC_Os03g54170Os.49761.1.S1_at11/113+30998772..31005425MADS-box protein CMB1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0007568biological_processaging
GO:0009723biological_processresponse to ethylene stimulus
GO:0010150biological_processleaf senescence
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11707.1.A1_at--1159--9811Chr03:30975029..30975053 (25 bp)
TACGTGTTCCGGTTCTACGACCGCG
LOC_Os03g54130
Os.11707.1.A1_at--125--4691Chr03:30975075..30975099 (25 bp)
GCGGCACGGAGCTGAACCACGCCGT
LOC_Os03g54130
Os.11707.1.A1_at--861--1931Chr03:30975129..30975153 (25 bp)
ACGGCACGGGCTACTGGCTGATGAA
LOC_Os03g54130
Os.11707.1.A1_at--12--3751Chr03:30975247..30975271 (25 bp)
CTCCTACCCCGTCTGATTATATAAA
LOC_Os03g54130
Os.11707.1.A1_at--981--331Chr03:30975267..30975291 (25 bp)
ATAAACAAAACACACGCCGATCAAC
LOC_Os03g54130
Os.11707.1.A1_at--359--51Chr03:30975302..30975326 (25 bp)
ATTGATTCGATGGATCAGTTTCAAA
LOC_Os03g54130
Os.11707.1.A1_at--552--271Chr03:30975455..30975479 (25 bp)
ATATGTGCTCTGGTATGTATAGCGA
LOC_Os03g54130
Os.11707.1.A1_at--386--4811Chr03:30975461..30975485 (25 bp)
GCTCTGGTATGTATAGCGACACTGC
LOC_Os03g54130
Os.11707.1.A1_at--588--4251Chr03:30975487..30975511 (25 bp)
CCGTGTCAACATGTATTCTGAAATC
LOC_Os03g54130
Os.11707.1.A1_at--1156--3791Chr03:30975504..30975528 (25 bp)
CTGAAATCTGAACCGGCCGGCCCGT
LOC_Os03g54130
Os.11707.1.A1_at--794--7571Chr03:30975558..30975582 (25 bp)
GGGCTGTACGTAGCTGTGTGTATAT
LOC_Os03g54130
Target Sequence 
TACGTGTTCCGGTTCTACGACCGCGGCGTGCTCGGCGGCGCCGGGTGCGGCACGGAGCTGAACCACGCCGTGACGGCGGT
CGGGTACGGCACGGCGAGCGACGGCACGGGCTACTGGCTGATGAAGAACTCGTGGGGCGCGTCGTGGGGCGAGGGCGGCT
ACGTCAGGATNCCGCCGCGGCGTCGGCCGCGAGGGCNCCTGCGGCATCGCACAGATGGCCTCCTACCCCGTCTGATTATA
TAAACAAAACACACGCCGATCAACCACNTCATTAATTGATTCGATGGATCAGTTTCAAAATATAAGTCATTCTANCATTN
TCTACATTCATATTAATGTTAATGAATNTAATATGAATATAGAAAATACATGAATGNCTTNCATTATGAAACGGAGGAAA
TATAAATATTAATTAAGATGTGTATATATATGTGCTCTGGTATGTATAGCGACACTGCNCCGTGTCAACATGTATTCTGA
AATCTGAACCGGCCGGCCCGTGCAGGAAGTCTGNAAAAGTTGGACGCGCGGGGCTGTACGTAGCTGTGTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11707.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis