Browse Element(s) Details


Os.11721.1.S1_at

Description gb:AK101515.1
DB_XREF= gi:32986724
TID=Os.11721.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.11721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046F12, full insert sequence.
FL= gb:AK101515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0745011/11transducin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein
LOC_Os12g07430OsAffx.31632.1.S1_at10/1112+3663522..3664234hypothetical protein
LOC_Os12g07430OsAffx.25932.1.S1_at6/1112+3663522..3664234hypothetical protein
LOC_Os12g07440OsAffx.7513.1.S1_at11/1112+3667705..3669772hypothetical protein
LOC_Os12g07450Os.11721.1.S1_at11/1112+3671806..3678298transducin family protein, putative, expressed
LOC_Os12g07460OsAffx.19532.1.S1_at11/1112+3681711..3682528hypothetical protein
LOC_Os12g07470OsAffx.7514.1.S1_at9/1112+3695019..3698086hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11721.1.S1_at--668--3071Chr12:3672391..3672415 (25 bp)
AATCATCAGTCAAACTCTTCGGAGT
LOC_Os12g07450
Os.11721.1.S1_at--391--9831Chr12:3672317..3672341 (25 bp)
TAAAGCAACCGGTTCCAGCTTCAAG
LOC_Os12g07450
Os.11721.1.S1_at--1133--3051Chr12:3672291..3672315 (25 bp)
AATCTTCAGCTGTTGTCTTCACATG
LOC_Os12g07450
Os.11721.1.S1_at--1100--2851Chr12:3672262..3672286 (25 bp)
AAGTGTTCTGGTGGGCACATTGCTC
LOC_Os12g07450
Os.11721.1.S1_at--1003--2071Chr12:3672246..3672270 (25 bp)
ACATTGCTCTGGTAATCTGGTTAAT
LOC_Os12g07450
Os.11721.1.S1_at--913--491Chr12:3672216..3672240 (25 bp)
ATCGGTGGTCATGTTTCTTACTAAC
LOC_Os12g07450
Os.11721.1.S1_at--1102--4111Chr12:3672142..3672166 (25 bp)
CGCTCATTTTGCGTGGCCAGATATG
LOC_Os12g07450
Os.11721.1.S1_at--1085--4391Chr12:3672127..3672151 (25 bp)
GCCAGATATGCCAGTGTTGCCATTT
LOC_Os12g07450
Os.11721.1.S1_at--1052--3351Chr12:3672029..3672053 (25 bp)
CACCGTATGTGTTTCGTACTTTTCA
LOC_Os12g07450
Os.11721.1.S1_at--977--7011Chr12:3672014..3672038 (25 bp)
GTACTTTTCAGCGAGCCGACTAGTG
LOC_Os12g07450
Os.11721.1.S1_at--197--6471Chr12:3671982..3672006 (25 bp)
GATAATGGATGCCACTTACCTGGTG
LOC_Os12g07450
Target Sequence 
AATCATCAGTCAAACTCTTCGGAGTTAGTTTTAGGTAACCCTGTTTCAAAGGATAGGGTGATCACAACTTCAAATAAAGC
AACCGGTTCCAGCTTCAAGCAATCTTCAGCTGTTGTCTTCACATGACAAAAGTGTTCTGGTGGGCACATTGCTCTGGTAA
TCTGGTTAATTGATCATCGGTGGTCATGTTTCTTACTAACNCCGTGATTTTGGGAAGGGGGTGGGAGGAACTCTTGCTGG
TGATGGAGCCGCTCATTTTGCGTGGCCAGATATGCCAGTGTTGCCATTTGTGTGGCTCAATGGAATAATGGGGTATTCTC
CTGTACAGAGATACATATAGTCCAAGATAAAATGTACAATTTCACCGTATGTGTTTCGTACTTTTCAGCGAGCCGACTAG
TGATGGGAGGATAATGGATGCCACTTACCTGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis