Browse Element(s) Details


OsAffx.7513.1.S1_at

Description tigr:9640.m00673
TID=OsAffx.7513.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0744011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07390Os.26939.1.A1_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_s_at11/1112+3640688..3643981expressed protein
LOC_Os12g07390OsAffx.31631.1.S1_at8/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.3740.3.S1_s_at1/1112+3640688..3643981expressed protein
LOC_Os12g07390Os.12316.1.S1_at1/1112+3640688..3643981expressed protein
LOC_Os12g07400OsAffx.19530.1.S1_at11/1112+3649452..3650472hypothetical protein
LOC_Os12g07410OsAffx.19531.1.S1_at11/1112+3657273..3658295hypothetical protein
LOC_Os12g07420OsAffx.7512.1.S1_at11/1112+3661130..3661579hypothetical protein
LOC_Os12g07430OsAffx.31632.1.S1_at10/1112+3663522..3664234hypothetical protein
LOC_Os12g07430OsAffx.25932.1.S1_at6/1112+3663522..3664234hypothetical protein
LOC_Os12g07440OsAffx.7513.1.S1_at11/1112+3667705..3669772hypothetical protein
LOC_Os12g07450Os.11721.1.S1_at11/1112+3671806..3678298transducin family protein, putative, expressed
LOC_Os12g07460OsAffx.19532.1.S1_at11/1112+3681711..3682528hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7513.1.S1_at--1102--6231Chr12:3668532..3668556 (25 bp)
GATGGACTTGGCTTTGAGTCTCTCA
LOC_Os12g07440
OsAffx.7513.1.S1_at--343--911Chr12:3668556..3668580 (25 bp)
AGGCGTGATGCTGGTTTTACTGTCA
LOC_Os12g07440
OsAffx.7513.1.S1_at--244--3831Chr12:3668582..3668606 (25 bp)
CTGCTACAGCCTCGTGTTGGGAGAA
LOC_Os12g07440
OsAffx.7513.1.S1_at--775--9891Chr12:3668719..3668743 (25 bp)
TACTCATGTTCCCTCAAGTGGACAT
LOC_Os12g07440
OsAffx.7513.1.S1_at--1087--871Chr12:3668748..3668772 (25 bp)
AGGCCACATATAGTGCACTTCCTTG
LOC_Os12g07440
OsAffx.7513.1.S1_at--601--9231Chr12:3668767..3668791 (25 bp)
TCCTTGCCCCTGAATTACGGTATGT
LOC_Os12g07440
OsAffx.7513.1.S1_at--249--7491Chr12:3668804..3668828 (25 bp)
GTGGGTCGTCGCCATTGACATGAAC
LOC_Os12g07440
OsAffx.7513.1.S1_at--80--6411Chr12:3668834..3668858 (25 bp)
GATCGTGGAGTCATCTTCTCTGTAT
LOC_Os12g07440
OsAffx.7513.1.S1_at--427--10511Chr12:3668878..3668902 (25 bp)
TTCAAACTGAGGACGCTGGCCTGAC
LOC_Os12g07440
OsAffx.7513.1.S1_at--933--4851Chr12:3669659..3669683 (25 bp)
GCTACCATTTTGCTTTCTTCTAAAT
LOC_Os12g07440
OsAffx.7513.1.S1_at--800--8051Chr12:3669698..3669722 (25 bp)
GGAGAGGATTCTGTCGTTTCTCGAC
LOC_Os12g07440
Target Sequence 
GATGGACTTGGCTTTGAGTCTCTCAGGCGTGATGCTGGTTTTACTGTCACCTGCTACAGCCTCGTGTTGGGAGAACATAA
GAAGAAGAAGAAGAAACACAGGAGAACCATGGAGTGGAGGGAGGACTACAAGATCACCTCCAATGAGCTCTGGTCTATCA
ACAGCCTTGACTGCCTCCCACGCACCTTACTCATGTTCCCTCAAGTGGACATTGACAGGCCACATATAGTGCACTTCCTT
GCCCCTGAATTACGGTATGTCATCAAGAAGATGTGGGTCGTCGCCATTGACATGAACACCAAGATCGTGGAGTCATCTTC
TCTGTATATCAATGGGAAGGAGGACCTTCAAACTGAGGACGCTGGCCTGACCCGTGCAAAGTCGCGCTTTCCGCAGTCCT
TCCTCCCATCTGACTTCTCCAAGTTCATCACTTTCTCAAGTACATCTTCCTGCCCAGCTACCATTTTGCTTTCTTCTAAA
TATGCTATGGTTCCTGGAGAGGATTCTGTCGTTTCTCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7513.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis