Browse Element(s) Details


Os.11755.1.S1_at

Description gb:AK101879.1
DB_XREF= gi:32987088
TID=Os.11755.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033070J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033070J24, full insert sequence.
FL= gb:AK101879.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3548011/11MiaB-like tRNA modifying enzyme, archaeal-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35440NANA4+21382935..21384839retrotransposon protein, putative, unclassified
LOC_Os04g35450NANA4+21388350..21391049retrotransposon protein, putative, unclassified
LOC_Os04g35460NANA4+21391868..21394010retrotransposon protein, putative, unclassified
LOC_Os04g35470NANA4+21396433..21398027retrotransposon protein, putative, unclassified
LOC_Os04g35480Os.11755.1.S1_at11/114+21404275..21407936MiaB-like tRNA modifying enzyme, archaeal-type family protein, expressed
LOC_Os04g35490OsAffx.26343.1.S1_x_at11/114+21408362..21410433expressed protein
LOC_Os04g35490Os.36307.1.S1_at11/114+21408362..21410433expressed protein
LOC_Os04g35500NANA4+21413253..21414522ZF-HD protein dimerisation region containing protein, expressed
LOC_Os04g35510Os.36698.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35510OsAffx.14157.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11755.1.S1_at--443--6631Chr04:21404843..21404867 (25 bp)
GTTGAGGAAGCCACTTGCTGCGGCA
LOC_Os04g35480
Os.11755.1.S1_at--431--8611Chr04:21404808..21404832 (25 bp)
TGGTGCCTGCACATGCTCTGATGCA
LOC_Os04g35480
Os.11755.1.S1_at--699--3191Chr04:21404735..21404759 (25 bp)
CAATCCTGTGGTGATGCTACTCATC
LOC_Os04g35480
Os.11755.1.S1_at--583--2991Chr04:21404609..21404633 (25 bp)
AATGTAGCAGCTAGGAGGTTCCCAG
LOC_Os04g35480
Os.11755.1.S1_at--670--1011Chr04:21404594..21404618 (25 bp)
AGGTTCCCAGATGTTGATACGATTC
LOC_Os04g35480
Os.11755.1.S1_at--508--8871Chr04:21404551..21404575 (25 bp)
TGAGCTTTGCCACGACAGTAACCCT
LOC_Os04g35480
Os.11755.1.S1_at--728--1171Chr04:21404535..21404559 (25 bp)
AGTAACCCTCATTGCACTGCTAGCT
LOC_Os04g35480
Os.11755.1.S1_at--9--1831Chr04:21404495..21404519 (25 bp)
ACGCCCTCCTACTAGTAAGTCTGGT
LOC_Os04g35480
Os.11755.1.S1_at--551--7471Chr04:21404447..21404471 (25 bp)
GTGTGTTACTGCTCAGTTTTGACCA
LOC_Os04g35480
Os.11755.1.S1_at--225--6811Chr04:21404432..21404456 (25 bp)
GTTTTGACCATTTTTCTGTATCCAT
LOC_Os04g35480
Os.11755.1.S1_at--394--9391Chr04:21404405..21404429 (25 bp)
TCGATCCTTCTGTTTGCCGCAAAGA
LOC_Os04g35480
Target Sequence 
GTTGAGGAAGCCACTTGCTGCGGCACGGACTCTTNTGGTGCCTGCACATGCTCTGATGCAGCACAGCNATGCAATCCCGG
TCCAGAGCGATCCGAAAATTCGACGCCCCAATCCTGTGGTGATGCTACTCATCAGGAAGCTGTTCAGTCTAAACTTGTGA
GAAGAAATGTTGAAGGAGCGGTGAAAAGTAGCGAAAGTGATACAGCGAAACAGGTAGGGGAGATTCAGCGACTAAATGTA
GCAGCTAGGAGGTTCCCAGATGTTGATACGATTCTGTGGGGTGGTTTGGCCGTGAGCTTTGCCACGACAGTAACCCTCAT
TGCACTGCTAGCTTACAAGATTTCTTCCACGCCCTCCTACTAGTAAGTCTGGTGCATGTGTAACTGTAGTTGAGCTGTGT
GTTACTGCTCAGTTTTGACCATTTTTCTGTATCCATCCTCGATCCTTCTGTTTGCCGCAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11755.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis