Browse Element(s) Details


OsAffx.26343.1.S1_x_at

Description tigr:9632.m03416
TID=OsAffx.26343.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Late embryogenesis abundant protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3549011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35440NANA4+21382935..21384839retrotransposon protein, putative, unclassified
LOC_Os04g35450NANA4+21388350..21391049retrotransposon protein, putative, unclassified
LOC_Os04g35460NANA4+21391868..21394010retrotransposon protein, putative, unclassified
LOC_Os04g35470NANA4+21396433..21398027retrotransposon protein, putative, unclassified
LOC_Os04g35480Os.11755.1.S1_at11/114+21404275..21407936MiaB-like tRNA modifying enzyme, archaeal-type family protein, expressed
LOC_Os04g35490OsAffx.26343.1.S1_x_at11/114+21408362..21410433expressed protein
LOC_Os04g35490Os.36307.1.S1_at11/114+21408362..21410433expressed protein
LOC_Os04g35500NANA4+21413253..21414522ZF-HD protein dimerisation region containing protein, expressed
LOC_Os04g35510Os.36698.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35510OsAffx.14157.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26343.1.S1_x_at--555--8631Chr04:21409413..21409437 (25 bp)
TGGGTGACGTTCGTGTCCAGCTACG
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--571--1511Chr04:21409462..21409486 (25 bp)
AGCAGCTCGCCATGGTGCAGAGCAA
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--1011--1351Chr04:21409480..21409504 (25 bp)
AGAGCAAGCTGTTCCCGATGTACTT
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--969--9091Chr04:21409636..21409660 (25 bp)
TGCTCCTGGAGCCAAAAGCCACCAA
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--872--4411Chr04:21409653..21409756 (25 bp)
GCCACCAAAGTGATGTTCGAGAGGA
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--551--1071Chr04:21409786..21409810 (25 bp)
AGGGACATGGCCGACATCGTCGACC
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--135--2671Chr04:21409879..21409903 (25 bp)
AAGCCGGCAGGCAACAACAATATGG
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--295--1631Chr04:21409976..21410000 (25 bp)
AGCGGCTCAAGAAGCTGAACGGCTA
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--940--8971Chr04:21409991..21410015 (25 bp)
TGAACGGCTACTCGTCTCTGTGCAA
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--1005--8671Chr04:21410009..21410033 (25 bp)
TGTGCAACGTGCTGTGCCTGATGGC
LOC_Os04g35490
OsAffx.26343.1.S1_x_at--125--3872Chr09:18653471..18653490 (20 bp)
CTGATGGCGCTGACGTGGCACCTCG
NONE
Target Sequence 
TGGGTGACGTTCGTGTCCAGCTACGTCCTCGCCGCGGCGCTGCCCCGGCAGCAGCTCGCCATGGTGCAGAGCAAGCTGTT
CCCGATGTACTTCCGCGCCGTGGCGTACGGCGTCGGCCTCGCGCTCGCGGCGCACCTGCTCGGCCGCGAGCGCAGCTCCC
TCGCCGCGCGCGCCCAGAGCGTCAACCTCCTCGCCGCGCTCGCCCTGGTCCTCGCCAACATGCTGCTCCTGGAGCCAAAA
GCCACCAAAGTGATGTTCGAGAGGATGAAGGTGGAGAAGGAGGAAGGCAGGGGGAGGGACATGGCCGACATCGTCGACCC
GCCAACGGTCACCGTCGCGGCGGGCAACACGGCCACCACCACCACCGTTCCCACGGCGGCGGCGCGCAAGCCGGCAGGCA
ACAACAATATGGCGGCGAAGTCGGCGGCGGCGGCGGCGCCGGTGGACGAGCAGACGTCCAAGAGCCGGGTGGCGACGCTG
AACCAGCGGCTCAAGAAGCTGAACGGCTACTCGTCTCTGTGCAACGTGCTGTGCCTGATGGCGCTGACGTGGCACCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26343.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis