Browse Element(s) Details


Os.36307.1.S1_at

Description gb:AK063725.1
DB_XREF= gi:32973743
TID=Os.36307.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-120-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-120-D11, full insert sequence.
FL= gb:AK063725.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3549011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35440NANA4+21382935..21384839retrotransposon protein, putative, unclassified
LOC_Os04g35450NANA4+21388350..21391049retrotransposon protein, putative, unclassified
LOC_Os04g35460NANA4+21391868..21394010retrotransposon protein, putative, unclassified
LOC_Os04g35470NANA4+21396433..21398027retrotransposon protein, putative, unclassified
LOC_Os04g35480Os.11755.1.S1_at11/114+21404275..21407936MiaB-like tRNA modifying enzyme, archaeal-type family protein, expressed
LOC_Os04g35490OsAffx.26343.1.S1_x_at11/114+21408362..21410433expressed protein
LOC_Os04g35490Os.36307.1.S1_at11/114+21408362..21410433expressed protein
LOC_Os04g35500NANA4+21413253..21414522ZF-HD protein dimerisation region containing protein, expressed
LOC_Os04g35510Os.36698.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed
LOC_Os04g35510OsAffx.14157.1.S1_at11/114+21422013..21424151CENP-E-like kinetochore protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36307.1.S1_at--748--4411Chr04:21410077..21410101 (25 bp)
GCCAGCGTCTGCTAGGCTCAAAACT
LOC_Os04g35490
Os.36307.1.S1_at--503--3531Chr04:21410135..21410159 (25 bp)
CATGCTGTAGCTTCTTGTAGTTTTT
LOC_Os04g35490
Os.36307.1.S1_at--1014--1211Chr04:21410168..21410192 (25 bp)
AGTTCAGGCAGTTGTCATGGCGTCT
LOC_Os04g35490
Os.36307.1.S1_at--379--871Chr04:21410184..21410208 (25 bp)
ATGGCGTCTGATCTGTTCGTATGTA
LOC_Os04g35490
Os.36307.1.S1_at--225--4891Chr04:21410220..21410244 (25 bp)
GCTTAGGTATATTTCGTCGACGTAA
LOC_Os04g35490
Os.36307.1.S1_at--305--2411Chr04:21410245..21410269 (25 bp)
AAACAGTAGCATGTCGATCTGCTGT
LOC_Os04g35490
Os.36307.1.S1_at--651--6411Chr04:21410260..21410284 (25 bp)
GATCTGCTGTTGTTTGTAGTTTCCT
LOC_Os04g35490
Os.36307.1.S1_at--338--8771Chr04:21410270..21410294 (25 bp)
TGTTTGTAGTTTCCTGCAGTGTTCT
LOC_Os04g35490
Os.36307.1.S1_at--704--10551Chr04:21410291..21410315 (25 bp)
TTCTTGCAGGTTGGGATGTAGCTCA
LOC_Os04g35490
Os.36307.1.S1_at--263--2431Chr04:21410315..21410339 (25 bp)
AAAACTGCTGCATTTCGGACACGAC
LOC_Os04g35490
Os.36307.1.S1_at--429--391Chr04:21410399..21410423 (25 bp)
ATCACGCGCGATCGATCGTTGCATC
LOC_Os04g35490
Target Sequence 
GCCAGCGTCTGCTAGGCTCAAAACTNTTCGTCGTCCGTGTCGTTTGCTGTGAATNTGACATGCTGTAGCTTCTTGTAGTT
TTTACCGTTTTAGTTCAGGCAGTTGTCATGGCGTCTGATCTGTTCGTATGTATCAATGTACTTGCTTAGGTATATTTCGT
CGACGTAAAAACAGTAGCATGTCGATCTGCTGTTGTTTGTAGTTTCCTGCAGTGTTCTTGCAGGTTGGGATGTAGCTCAA
AACTGCTGCATTTCGGACACGACGTCCGTTGTTGGCTTGTTTTAGCTGGGATGAATGTAACTGGAAACCCNTAATNTGTT
TNATCACGCGCGATCGATCGTTGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis