Browse Element(s) Details


Os.11761.1.S1_at

Description gb:AK070462.1
DB_XREF= gi:32980486
TID=Os.11761.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11761 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023049D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023049D08, full insert sequence.
FL= gb:AK070462.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4261011/11PPR986-12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42580Os.12634.1.S1_at11/118+26776238..26780786Protein kinase domain containing protein, expressed
LOC_Os08g42590Os.11632.1.S1_at11/118+26785354..26788793MtN19, putative, expressed
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42610Os.11761.1.S1_at11/118+26799468..26802402PPR986-12, putative, expressed
LOC_Os08g42620Os.53626.1.S1_at11/118+26805990..26809280DHHC zinc finger domain containing protein, expressed
LOC_Os08g42630Os.55968.1.S1_at11/118+26812829..26813804expressed protein
LOC_Os08g42640Os.7498.1.S1_at11/118+26815747..26820669Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g42650NANA8+26823701..26829200retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11761.1.S1_at--438--2051Chr08:26800039..26800063 (25 bp)
ACTTCCATCGCATGTCCAAGGTCTA
LOC_Os08g42610
Os.11761.1.S1_at--535--1031Chr08:26800021..26800045 (25 bp)
AGGTCTACAACCTTGTGCCAAGAAT
LOC_Os08g42610
Os.11761.1.S1_at--648--51Chr08:26799980..26800004 (25 bp)
ATGGTCGACCTTTTGGGACGTGCCA
LOC_Os08g42610
Os.11761.1.S1_at--484--10491Chr08:26799928..26799952 (25 bp)
TTAAAGATATGCCTGTCGCTCCTGA
LOC_Os08g42610
Os.11761.1.S1_at--565--7231Chr08:26799914..26799938 (25 bp)
GTCGCTCCTGATGTGGTAGTATGGC
LOC_Os08g42610
Os.11761.1.S1_at--272--871Chr08:26799894..26799918 (25 bp)
ATGGCGGTCATTGTTGTTTGCCTGT
LOC_Os08g42610
Os.11761.1.S1_at--569--6851Chr08:26799879..26799903 (25 bp)
GTTTGCCTGTAGAGCTTCTGGACAA
LOC_Os08g42610
Os.11761.1.S1_at--804--2651Chr08:26799698..26799722 (25 bp)
AAGCCCGGTTGCTCTTTCATTGAAG
LOC_Os08g42610
Os.11761.1.S1_at--498--10131Chr08:26799613..26799637 (25 bp)
TATGCAACACTCTTTTTGGGATCAA
LOC_Os08g42610
Os.11761.1.S1_at--260--691Chr08:26799589..26799613 (25 bp)
ATGAGCTACTAGTGGCGGAGTCCTT
LOC_Os08g42610
Os.11761.1.S1_at--117--7551Chr08:26799578..26799602 (25 bp)
GTGGCGGAGTCCTTCCTAATGTAAA
LOC_Os08g42610
Target Sequence 
ACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGT
GCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTT
GTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGT
GTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATNAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATG
GGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGA
TGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAA
TGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis