Browse Element(s) Details


Os.7498.1.S1_at

Description gb:AK067119.1
DB_XREF= gi:32977137
TID=Os.7498.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095B01, full insert sequence.
FL= gb:AK067119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4264011/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42600Os.40106.1.A1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42600Os.40106.2.S1_s_at11/118+26789360..26795471retinoblastoma, putative, expressed
LOC_Os08g42610Os.11761.1.S1_at11/118+26799468..26802402PPR986-12, putative, expressed
LOC_Os08g42620Os.53626.1.S1_at11/118+26805990..26809280DHHC zinc finger domain containing protein, expressed
LOC_Os08g42630Os.55968.1.S1_at11/118+26812829..26813804expressed protein
LOC_Os08g42640Os.7498.1.S1_at11/118+26815747..26820669Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g42650NANA8+26823701..26829200retrotransposon protein, putative, unclassified
LOC_Os08g42660NANA8+26830143..26833284retrotransposon protein, putative, unclassified
LOC_Os08g42670Os.38426.1.S1_at11/118+26835906..26845398Resistance protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7498.1.S1_at--722--811Chr08:26820089..26820113 (25 bp)
ATGGAGGCTTTACTCGAAGACCCAC
LOC_Os08g42640
Os.7498.1.S1_at--279--431Chr08:26820152..26820176 (25 bp)
ATCATTCCATGCATCCTCAGAGGAT
LOC_Os08g42640
Os.7498.1.S1_at--34--2911Chr08:26820192..26820216 (25 bp)
AAGGTTATCTTCCTCGTTGTTTGTG
LOC_Os08g42640
Os.7498.1.S1_at--117--631Chr08:26820297..26820321 (25 bp)
ATGCTGCTTCTGTTGTCGGAATTTA
LOC_Os08g42640
Os.7498.1.S1_at--901--151Chr08:26820317..26820341 (25 bp)
ATTTAGGGTTTTCTAGCTGGCAGCC
LOC_Os08g42640
Os.7498.1.S1_at--1031--1611Chr08:26820331..26820355 (25 bp)
AGCTGGCAGCCCTAGGTTTGATTAA
LOC_Os08g42640
Os.7498.1.S1_at--444--2891Chr08:26820354..26820378 (25 bp)
AAGGGTTGTGCTTTATCCTATCTCA
LOC_Os08g42640
Os.7498.1.S1_at--757--6971Chr08:26820424..26820448 (25 bp)
GTACCAAGCAGCGATTGTTGCCATT
LOC_Os08g42640
Os.7498.1.S1_at--144--9291Chr08:26820514..26820538 (25 bp)
TCCGGTGGCTGGTTTTCGTATGTAT
LOC_Os08g42640
Os.7498.1.S1_at--583--8771Chr08:26820570..26820594 (25 bp)
TGTTTGGTGATCTATTCCTCTGCAC
LOC_Os08g42640
Os.7498.1.S1_at--207--4771Chr08:26820615..26820639 (25 bp)
GCTGCATCCTGCAACATGTTTGACT
LOC_Os08g42640
Target Sequence 
ATGGAGGCTTTACTCGAAGACCCACCNGGGGAGCGAATGCCGCAGAGCCACCCAGATAGTGGATATCATTCCATGCATCC
TCAGAGGATGCCGCCANTTCTTGTAAAGGTTATCTTCCTCGTTGTTTGTGTATATCTCAAAATTAGTTGGAATTATTTGC
TCCGAGAGAAAACGATGAATCAGATGCTATTGTTTCCANAGGAACTAAATGATGCTGCTTCTGTTGTCGGAATTTAGGGT
TTTCTAGCTGGCAGCCCTAGGTTTGATTAAGGGTTGTGCTTTATCCTATCTCATTTGTTGCAATGGGCAGAAACTATTTG
GAAACATAAGCTTAAACTGTACCAAGCAGCGATTGTTGCCATTGAACATAGTTGTGATGCCATTGATGCNNGGTGTTTCT
CNCAAATCGTATGTGTCTGGATGTAGCTGTCCGGTGGCTGGTTTTCGTATGTATAGTAAGTTGCTCTGCTAGTGCTGCGT
AAAATTGTTTGGTGATCTATTCCTCTGCACTTCATTTTTGTGGTGCTGGAGCTGCATCCTGCAACATGTTTGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis