Browse Element(s) Details


Os.38426.1.S1_at

Description gb:AY336988.1
DB_XREF= gi:33243047
TID=Os.38426.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38426 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) disease related protein 1 mRNA, complete cds.
PROD=disease related protein 1
FL= gb:AY336988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4267011/11Resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42630Os.55968.1.S1_at11/118+26812829..26813804expressed protein
LOC_Os08g42640Os.7498.1.S1_at11/118+26815747..26820669Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g42650NANA8+26823701..26829200retrotransposon protein, putative, unclassified
LOC_Os08g42660NANA8+26830143..26833284retrotransposon protein, putative, unclassified
LOC_Os08g42670Os.38426.1.S1_at11/118+26835906..26845398Resistance protein, putative, expressed
LOC_Os08g42680OsAffx.29634.1.S1_at11/118+26848171..26849460hypothetical protein
LOC_Os08g42690Os.55763.1.S1_at4/118+26849865..26853609Ankyrin repeat domain protein 2, putative, expressed
LOC_Os08g42700Os.49225.1.S1_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700Os.49225.1.S2_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700OsAffx.10059.1.S1_at1/118+26856821..26864804NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38426.1.S1_at--650--4471Chr08:26836467..26836491 (25 bp)
GCCTGTGGGAGCATTCGTTCAACGA
LOC_Os08g42670
Os.38426.1.S1_at--772--9391Chr08:26836453..26836477 (25 bp)
TCGTTCAACGATCATGTGGTCTGTC
LOC_Os08g42670
Os.38426.1.S1_at--200--991Chr08:26836407..26836431 (25 bp)
AGGAGGCCACCGCAGTAGTATTGTT
LOC_Os08g42670
Os.38426.1.S1_at--592--1191Chr08:26836394..26836418 (25 bp)
AGTAGTATTGTTCCCGAGCCTGAGG
LOC_Os08g42670
Os.38426.1.S1_at--251--7951Chr08:26836353..26836377 (25 bp)
GGATATGTAGTCATGACCGCCTCGA
LOC_Os08g42670
Os.38426.1.S1_at--486--1791Chr08:26836338..26836362 (25 bp)
ACCGCCTCGAATCAGTGCAGTTTGG
LOC_Os08g42670
Os.38426.1.S1_at--78--5911Chr08:26836291..26836315 (25 bp)
GAGCTGCTGCAGTTTAGTCATTTCA
LOC_Os08g42670
Os.38426.1.S1_at--281--10071Chr08:26836277..26836301 (25 bp)
TAGTCATTTCATTGGCTCACGCGTT
LOC_Os08g42670
Os.38426.1.S1_at--280--4211Chr08:26836120..26836144 (25 bp)
CCCCTTCTCAGGTTCAGTCTATATA
LOC_Os08g42670
Os.38426.1.S1_at--36--6171Chr08:26836047..26836071 (25 bp)
GAGGTTGGACGGTACGCTGCAATCC
LOC_Os08g42670
Os.38426.1.S1_at--1025--4751Chr08:26836032..26836056 (25 bp)
GCTGCAATCCCACTATAAGCTTTGA
LOC_Os08g42670
Target Sequence 
GCCTGTGGGAGCATTCGTTCAACGATCATGTGGTCTGTCTCAACTTCCGCCAGGAGCAGCAGGAGGCCACCGCAGTAGTA
TTGTTCCCGAGCCTGAGGGTGTTGGAGGTAAGTAGGATATGTAGTCATGACCGCCTCGAATCAGTGCAGTTTGGAGGAGG
CGCAACCCCCAAGCTTGAGCTGCTGCAGTTTAGTCATTTCATTGGCTCACGCGTTGGATTTTCGTCGGGGCTAGAAGAGC
TCGAAAATCTCAGGGAATTCATGCTGAGTGGTAGGCAGAGGCAGTACAGGGACGACTTTGTGAAAGACGTGGAGGAGCAG
CTTGCCAACCACCCAAACCCAAACAAGCCCCTTCTCAGGTTCAGTCTATATAACTAACACCGATGGATCGATCGATCGAT
CGAGGGTGTATTGCTCGCTCGAGGTTGGACGGTACGCTGCAATCCCACTATAAGCTTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38426.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis