Browse Element(s) Details


Os.55763.1.S1_at

Description gb:AK108758.1
DB_XREF= gi:32993967
TID=Os.55763.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55763 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-150-G03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-150-G03, full insert sequence.
FL= gb:AK108758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g426904/11Ankyrin repeat domain protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42650NANA8+26823701..26829200retrotransposon protein, putative, unclassified
LOC_Os08g42660NANA8+26830143..26833284retrotransposon protein, putative, unclassified
LOC_Os08g42670Os.38426.1.S1_at11/118+26835906..26845398Resistance protein, putative, expressed
LOC_Os08g42680OsAffx.29634.1.S1_at11/118+26848171..26849460hypothetical protein
LOC_Os08g42690Os.55763.1.S1_at4/118+26849865..26853609Ankyrin repeat domain protein 2, putative, expressed
LOC_Os08g42700Os.49225.1.S1_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700Os.49225.1.S2_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700OsAffx.10059.1.S1_at1/118+26856821..26864804NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55763.1.S1_at--768--3411Chr08:26852320..26852344 (25 bp)
CAGAAGGGCCTTACACTTTGCATGT
LOC_Os08g42690
Os.55763.1.S1_at--1040--2831Chr08:26853277..26853301 (25 bp)
AAGTACTTCTTGAGGCGGGTGCTGC
LOC_Os08g42690
Os.55763.1.S1_at--66--1411Chr08:26853515..26853539 (25 bp)
AGACGGCCATTGACGTTGCGAAGCT
LOC_Os08g42690
Os.55763.1.S1_at--775--2311Chr08:26853573..26853597 (25 bp)
AAAGGATGCCTTCCTGTAGATCGCC
LOC_Os08g42690
Os.55763.1.S1_at--381--6951Chr08:26853588..26853612 (25 bp)
GTAGATCGCCTTTGTTATTCTCATG
NONE
Os.55763.1.S1_at--856--7551Chr08:26853612..26853636 (25 bp)
GGGCGCATGAACAGTTTGGCTCCAG
NONE
Os.55763.1.S1_at--114--10871Chr08:26853627..26853651 (25 bp)
TTGGCTCCAGGATCATCATTCTTTA
NONE
Os.55763.1.S1_at--43--10491Chr08:26853645..26853669 (25 bp)
TTCTTTAATTTCTTTGGTGCCGCCA
NONE
Os.55763.1.S1_at--79--7291Chr08:26853661..26853685 (25 bp)
GTGCCGCCATTCATATTTCTTTGCA
NONE
Os.55763.1.S1_at--533--191Chr08:26853675..26853699 (25 bp)
ATTTCTTTGCAACCCAGTGGCAGTT
NONE
Os.55763.1.S1_at--494--4731Chr08:26853733..26853757 (25 bp)
GCTGTGGTTCACGATGACTTGCGTA
NONE
Target Sequence 
CAGAAGGGCCTTACACTTTGCATGTGGGTATGGGGAGTTGAAGTGTGCCCAAGTACTTCTTGAGGCGGGTGCTGCAGTGG
ATGCTTTGGACAAGAACAAGAACACTCCGCTGCATTACGCCGCTGGCTATGGTATGAAGGGGTGCGTGGATCTTCTGCTG
AAGAACGGAGCCGCTGTCACCCTCGAAAACATGGATGGCAAGACGGCCATTGACGTTGCGAAGCTCAACAACCAGGACGA
GGTTCTCAGGTTGCTGGAAAAGGATGCCTTCCTGTAGATCGCCTTTGTTATTCTCATGGGCGCATGAACAGTTTGGCTCC
AGGATCATCATTCTTTAATTTCTTTGGTGCCGCCATTCATATTTCTTTGCAACCCAGTGGCAGTTCATAAGATACGGTGA
AGGGGCTGCCACACAACTGCTGTGGTTCACGATGACTTGCGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55763.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis