Browse Element(s) Details


Os.49225.1.S1_at

Description gb:AK099855.1
DB_XREF= gi:32985064
TID=Os.49225.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49225 (NCBI UniGene Cluster)
UG_TITLE=PibH8 mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110K12, full insert sequence.
FL= gb:AB013451.1 gb:AK065372.1 gb:AK065693.1 gb:AK099855.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4270011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42660NANA8+26830143..26833284retrotransposon protein, putative, unclassified
LOC_Os08g42670Os.38426.1.S1_at11/118+26835906..26845398Resistance protein, putative, expressed
LOC_Os08g42680OsAffx.29634.1.S1_at11/118+26848171..26849460hypothetical protein
LOC_Os08g42690Os.55763.1.S1_at4/118+26849865..26853609Ankyrin repeat domain protein 2, putative, expressed
LOC_Os08g42700Os.49225.1.S1_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700Os.49225.1.S2_at11/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42700OsAffx.10059.1.S1_at1/118+26856821..26864804NB-ARC domain containing protein, expressed
LOC_Os08g42710OsAffx.29635.1.S1_at11/118+26884119..26894386NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49225.1.S1_at--79--6791Chr08:26857292..26857316 (25 bp)
GTTACCATGGTGTGTCTGCAGCTGC
LOC_Os08g42700
Os.49225.1.S1_at--980--1151Chr08:26857322..26857346 (25 bp)
AGTCTTCTTCTGTTACTGCTGCTGA
LOC_Os08g42700
Os.49225.1.S1_at--1015--1971Chr08:26857336..26857360 (25 bp)
ACTGCTGCTGAGCTGCTGCAATCCA
LOC_Os08g42700
Os.49225.1.S1_at--130--8891Chr08:26857383..26857407 (25 bp)
TGAGGCTAGACGTGCCGCCAAGCAA
LOC_Os08g42700
Os.49225.1.S1_at--873--8531Chr08:26857418..26857442 (25 bp)
TGGACCTCGTGAAGCTCATCACCAA
LOC_Os08g42700
Os.49225.1.S1_at--708--2871Chr08:26857488..26857512 (25 bp)
AAGTGGACCTGCTGGGACAGTGCCC
LOC_Os08g42700
Os.49225.1.S1_at--492--4031Chr08:26857512..26857536 (25 bp)
CGTTGTTCGAGCTGCCTACCAAAAG
LOC_Os08g42700
Os.49225.1.S1_at--1058--971Chr08:26857542..26857566 (25 bp)
AGGAGAGTTTGAATGCCACGCCTGG
LOC_Os08g42700
Os.49225.1.S1_at--1060--8331Chr08:26857571..26857595 (25 bp)
GGCTGATGCACTCCTTTGATGCAAA
LOC_Os08g42700
Os.49225.1.S1_at--735--5471Chr08:26857632..26857656 (25 bp)
GAACTCTCGCGAGGGTACTGGCAAG
LOC_Os08g42700
Os.49225.1.S1_at--728--9751Chr08:26857716..26857740 (25 bp)
TAATCTGCTTCATGACTTTACTGGA
LOC_Os08g42700
Target Sequence 
GTTACCATGGTGTGTCTGCAGCTGCCCCACAGTCTTCTTCTGTTACTGCTGCTGAGCTGCTGCAATCCACTGCCGCCATC
GACGACATTGATGAGGCTAGACGTGCCGCCAAGCAACAAGAAAAGGTGGACCTCGTGAAGCTCATCACCAACGACGGACA
AGGTGGACTTAGAGTGATTGCTGTGCTGGAAACAAGAAGTGGACCTGCTGGGACAGTGCCCGTTGTTCGAGCTGCCTACC
AAAAGCTCAAAGGAGAGTTTGAATGCCACGCCTGGGTAAGGCTGATGCACTCCTTTGATGCAAACCAATTCATTGGGAGC
TTGGTGAGGCAGTTCAAAGCGAACTCTCGCGAGGGTACTGGCAAGACACCACAAGGAACACCTTCTGGGGTGTCTGTTCT
GAATGAGATGGAAGCACAAGATTATAATCTGCTTCATGACTTTACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49225.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis