Browse Element(s) Details


Os.11762.5.S1_x_at

Description gb:AK106230.1
DB_XREF= gi:32991439
TID=Os.11762.5
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11762 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B01, full insert sequence.
FL= gb:AK106230.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4503011/11P-glycoprotein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g45000Os.50055.1.S1_at11/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45000OsAffx.11592.1.S1_x_at1/118+28111359..28113185phosphate:H+ symporter family protein, expressed
LOC_Os08g45010Os.11083.1.S1_at11/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45010Os.36409.1.S1_x_at1/118+28117584..28121148ATP-binding cassette sub-family F member 2, putative, expressed
LOC_Os08g45030Os.11762.5.S1_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S2_x_at11/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.2.S1_x_at9/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45030Os.11762.1.S1_x_at2/118+28131639..28137076P-glycoprotein 1, putative, expressed
LOC_Os08g45040OsAffx.17519.1.S1_s_at11/118+28139495..28141626Zinc finger protein 593, putative, expressed
LOC_Os08g45050NANA8+28155104..28155448hypothetical protein
LOC_Os08g45060NANA8+28157601..28159637Leucine Rich Repeat family protein, expressed
LOC_Os08g45070NANA8+28160719..28161803expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009926biological_processauxin polar transport
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005516molecular_functioncalmodulin binding
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11762.5.S1_x_at--530--531Chr08:28132793..28132817 (25 bp)
ATCGCCACCATGTTCTCAGTAATGA
LOC_Os08g45030
Os.11762.5.S1_x_at--777--3731Chr08:28132807..28132828 (22 bp)
CTCAGTAATGATAGGCGGCCTGGCT
LOC_Os08g45030
Os.11762.5.S1_x_at--306--7991Chr08:28132993..28133017 (25 bp)
GGATGATGGAGCACAAGCCGAGCAT
LOC_Os08g45030
Os.11762.5.S1_x_at--742--7651Chr08:28133071..28133095 (25 bp)
GGGATGTGGAGTTCTCGTACCCGTC
LOC_Os08g45030
Os.11762.5.S1_x_at--2--6391Chr08:28133204..28133228 (25 bp)
GATCGAGAGGTTCTACGAGCCCAAC
LOC_Os08g45030
Os.11762.5.S1_x_at--366--8531Chr08:28133245..28133269 (25 bp)
TGGACGGCCACGACCTGAGGGACCT
LOC_Os08g45030
Os.11762.5.S1_x_at--661--8891Chr08:28133260..28133284 (25 bp)
TGAGGGACCTCAACCTGCGGTGGCT
LOC_Os08g45030
Os.11762.5.S1_x_at--907--4511Chr08:28133287..28133311 (25 bp)
GCCGCCAGATTGGTCTGGTGAGCCA
LOC_Os08g45030
Os.11762.5.S1_x_at--994--551Chr08:28133337..28133357 (21 bp)
ATCCGGGAGAACCTGCTGCTGCTAG
LOC_Os08g45030
Os.11762.5.S1_x_at--569--2631Chr08:28137006..28137027 (22 bp)
AACCTGCTGCTGCTAGATGTTCTAA
LOC_Os08g45030
Os.11762.5.S1_x_at--964--8991Chr08:28137044..28137068 (25 bp)
TGAATTACTATACTGCTAGCTAGCT
LOC_Os08g45030
Target Sequence 
ATCGCCACCATGTTCTCAGTAATGATAGGCGGCCTGGCTCTTGGGCAGTCGGCTCCGAGCATGGCGGCGTTCGCCAAGGC
GCGGGTGGCGGCGGCGAAGATATTCCGGATGATGGAGCACAAGCCGAGCATGGAGCGGGAGGGCGGGGTGGAGCTGGAGG
CGGTGACGGGGCGGGTGGAGCTGCGGGATGTGGAGTTCTCGTACCCGTCGCGGCCAGACGTGGGGATCCTGCGGGGGTTG
TCGCTGAGCGTGCCGGCGGGGAAGACGATCGCGCTGGTGGGGAGCTCCGGGTCAGGGAAGAGCACGGTGGTGTCGCTGAT
CGAGAGGTTCTACGAGCCCAACGCCGGGACCATCCTGCTGGACGGCCACGACCTGAGGGACCTCAACCTGCGGTGGCTGC
GCCGCCAGATTGGTCTGGTGAGCCAGGAGCCGGCGCTGTTCGCCACCACCATCCGGGAGAACCTGCTGCTGCTAGATGTT
CTAAGAATGAATTAATGAAATGAATTACTATACTGCTAGCTAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11762.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis