Browse Element(s) Details


Os.11807.1.S1_at

Description gb:AK071803.1
DB_XREF= gi:32981826
TID=Os.11807.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11807 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023111M02, full insert sequence.
FL= gb:AK071803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3829411/11nitrate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38240NANA6+22626393..22629965retrotransposon protein, putative, unclassified
LOC_Os06g38250NANA6+22631137..22631904retrotransposon protein, putative, unclassified
LOC_Os06g38260NANA6+22635631..22637917retrotransposon protein, putative, unclassified
LOC_Os06g38270NANA6+22638451..22641111hypothetical protein
LOC_Os06g38280OsAffx.27986.1.S1_at11/116+22643581..22643962hypothetical protein
LOC_Os06g38294Os.11807.1.S1_at11/116+22654621..22663966nitrate transporter, putative, expressed
LOC_Os06g38310OsAffx.5044.1.S1_at10/116+22671920..22673617hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005509molecular_functioncalcium ion binding
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11807.1.S1_at--174--7831Chr06:22655084..22655108 (25 bp)
GGTACTACCTGAGCTCGGTGCTGGT
LOC_Os06g38294
Os.11807.1.S1_at--919--8871Chr06:22654964..22654988 (25 bp)
TGATGTGTGTGCTCAGCACGCTCAA
LOC_Os06g38294
Os.11807.1.S1_at--981--6691Chr06:22654924..22654948 (25 bp)
GTTCTGGGCCATCCGGTACAAGTAC
LOC_Os06g38294
Os.11807.1.S1_at--714--6451Chr06:22654871..22654895 (25 bp)
GATCAATCTGTAATGCAGGGTTAAC
LOC_Os06g38294
Os.11807.1.S1_at--81--1951Chr06:22654848..22654872 (25 bp)
ACTGTTTAATTATCTGGCAAGGTAA
LOC_Os06g38294
Os.11807.1.S1_at--186--6171Chr06:22654793..22654817 (25 bp)
GAGGATGCTCATTGCTGTGTGGAAT
LOC_Os06g38294
Os.11807.1.S1_at--841--1491Chr06:22654735..22654759 (25 bp)
AGCAGCGATTAAGCAAGTTGTTCAT
LOC_Os06g38294
Os.11807.1.S1_at--104--6651Chr06:22654719..22654743 (25 bp)
GTTGTTCATAAATAGATCGGTGTTC
LOC_Os06g38294
Os.11807.1.S1_at--1021--2811Chr06:22654656..22654680 (25 bp)
AAGTTCAGTTTATCTTTCACTGTTT
LOC_Os06g38294
Os.11807.1.S1_at--728--3311Chr06:22654639..22654663 (25 bp)
CACTGTTTTATATTGTTACGACCCA
LOC_Os06g38294
Os.11807.1.S1_at--975--6751Chr06:22654625..22654649 (25 bp)
GTTACGACCCATTAATAGTTGCTAA
LOC_Os06g38294
Target Sequence 
GGTACTACCTGAGCTCGGTGCTGGTGACGGTGGTGAACAGCGCGACGGGGCGCGGCGGGCGGCGGGCGTGGCTGCAGGGG
GAGAACCTGAACCACTACCNCCTGGAGAGGTTCTACTGGGTGATGTGTGTGCTCAGCACGCTCAACTACCTCTTCTTCTT
GTTCTGGGCCATCCGGTACAAGTACAGAAACGCCGGGGTCATCAAGGGATGATGATCAATCTGTAATGCAGGGTTAACTG
TTTAATTATCTGGCAAGGTAAAAAAAGGAGGGAGGTTAATTTGGTGGTCTTGAGGATGCTCATTGCTGTGTGGAATTGGT
TGGCTGGCTGTGGCCGATGAATGAAAAGAAGCAGCGATTAAGCAAGTTGTTCATAAATAGATCGGTGTTCAATGAAGGAA
AAGAAAAATAGTGAAGATAATGCATACTAAGTTCAGTTTATCTTTCACTGTTTTATATTGTTACGACCCATTAATAGTTG
CTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11807.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis