Browse Element(s) Details


OsAffx.27986.1.S1_at

Description tigr:9634.m03646
TID=OsAffx.27986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3828011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g38220Os.43124.1.S1_at1/116+22618319..22620632retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g38230OsAffx.27985.1.S1_at11/116+22622060..22624605hypothetical protein
LOC_Os06g38240NANA6+22626393..22629965retrotransposon protein, putative, unclassified
LOC_Os06g38250NANA6+22631137..22631904retrotransposon protein, putative, unclassified
LOC_Os06g38260NANA6+22635631..22637917retrotransposon protein, putative, unclassified
LOC_Os06g38270NANA6+22638451..22641111hypothetical protein
LOC_Os06g38280OsAffx.27986.1.S1_at11/116+22643581..22643962hypothetical protein
LOC_Os06g38294Os.11807.1.S1_at11/116+22654621..22663966nitrate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27986.1.S1_at--1086--7551Chr06:22643826..22643850 (25 bp)
GGGCGCCTCGTGGTACACCTTTCAA
LOC_Os06g38280
OsAffx.27986.1.S1_at--989--4431Chr06:22643830..22643854 (25 bp)
GCCTCGTGGTACACCTTTCAATTTG
LOC_Os06g38280
OsAffx.27986.1.S1_at--666--3771Chr06:22643832..22643856 (25 bp)
CTCGTGGTACACCTTTCAATTTGCA
LOC_Os06g38280
OsAffx.27986.1.S1_at--159--7511Chr06:22643835..22643859 (25 bp)
GTGGTACACCTTTCAATTTGCACAG
LOC_Os06g38280
OsAffx.27986.1.S1_at--1133--7831Chr06:22643837..22643861 (25 bp)
GGTACACCTTTCAATTTGCACAGTC
LOC_Os06g38280
OsAffx.27986.1.S1_at--406--2171Chr06:22643840..22643864 (25 bp)
ACACCTTTCAATTTGCACAGTCTCG
LOC_Os06g38280
OsAffx.27986.1.S1_at--245--1751Chr06:22643842..22643866 (25 bp)
ACCTTTCAATTTGCACAGTCTCGGC
LOC_Os06g38280
OsAffx.27986.1.S1_at--459--10331Chr06:22643845..22643869 (25 bp)
TTTCAATTTGCACAGTCTCGGCCGA
LOC_Os06g38280
OsAffx.27986.1.S1_at--509--9731Chr06:22643847..22643871 (25 bp)
TCAATTTGCACAGTCTCGGCCGAGG
LOC_Os06g38280
OsAffx.27986.1.S1_at--985--3111Chr06:22643849..22643873 (25 bp)
AATTTGCACAGTCTCGGCCGAGGCT
LOC_Os06g38280
OsAffx.27986.1.S1_at--43--8552Chr06:22643905..22643929 (25 bp)
TGGAGGTATACCACGGAAGGCCTTT
LOC_Os06g38280
Target Sequence 
GGGCGCCTCGTGGTACACCTTTCAATTTGCACAGTCTCGGCCGAGGCTCCCTACTCACCCTTGCCCGTGAGGGGCTTGTT
GGAGGTATACCACGGAAGGCCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis