Browse Element(s) Details


Os.11872.2.S1_at

Description gb:AK098921.1
DB_XREF= gi:32984130
TID=Os.11872.2
CNT=43
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.11872 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full insert sequence.
FL= gb:AK098921.1 gb:AK067777.1 gb:AK060837.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3202011/112-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g31984NANA4+18965481..18970377retrotransposon protein, putative, unclassified
LOC_Os04g32000Os.53383.1.S1_at11/114+18971208..18974400expressed protein
LOC_Os04g32000Os.53383.1.S1_x_at11/114+18971208..18974400expressed protein
LOC_Os04g32004NANA4+18977352..18977636hypothetical protein
LOC_Os04g32010Os.56217.1.S1_at11/114+18981733..18983917Acetolactate synthase III, chloroplast precursor, putative, expressed
LOC_Os04g32020Os.11872.1.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
LOC_Os04g32020Os.11872.2.S1_at11/114+18988323..189951512-oxoglutarate dehydrogenase E1 component, mitochondrial precursor, putative, expressed
LOC_Os04g32030Os.8263.1.S1_s_at11/114+19001737..19004943heavy metal-associated domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11872.2.S1_at--486--691Chr04:18994091..18994115 (25 bp)
ATGACCTCATCCAGCGCGAGTTGAA
LOC_Os04g32020
Os.11872.2.S1_at--884--2251Chr04:18994720..18994744 (25 bp)
AAATACGTTGGAAGGGCCCCATCTG
LOC_Os04g32020
Os.11872.2.S1_at--644--2491Chr04:18994755..18994779 (25 bp)
AACAGGTTTCTACTCCGTCCATGTG
LOC_Os04g32020
Os.11872.2.S1_at--208--3491Chr04:18994780..18994804 (25 bp)
CAGGAGCAAACCGAGCTTGTGCAGA
LOC_Os04g32020
Os.11872.2.S1_at--540--1471Chr04:18994802..18994826 (25 bp)
AGAAGGCACTGCAGCGAGACCCTAT
LOC_Os04g32020
Os.11872.2.S1_at--93--3251Chr04:18994827..18994851 (25 bp)
CAACTCTCCATTTTGAACCTGTAGA
LOC_Os04g32020
Os.11872.2.S1_at--476--2251Chr04:18994898..18994922 (25 bp)
AAATTATTGCCTGTGCAGCCATTTG
LOC_Os04g32020
Os.11872.2.S1_at--733--3371Chr04:18994913..18994937 (25 bp)
CAGCCATTTGGTGAATAATCCGCTT
LOC_Os04g32020
Os.11872.2.S1_at--380--3031Chr04:18994929..18994953 (25 bp)
AATCCGCTTCGGATGTTTGGTACCG
LOC_Os04g32020
Os.11872.2.S1_at--954--7651Chr04:18994983..18995007 (25 bp)
GGGATGCATCATTTTGTGTTTCTTA
LOC_Os04g32020
Os.11872.2.S1_at--980--9051Chr04:18995027..18995051 (25 bp)
TGCATCCAATGCTTACTTGAGGAGT
LOC_Os04g32020
Target Sequence 
ATGACCTCATCCAGCGCGAGTTGAAGCGATATCCAAATGCCGAGATTGTTTGGTGCCAAGAGGAACCCATGAACATGGGG
GCGTACAGCTACATCAATCCTCGCCTCCTGACCGCGATGAGGGCGCTTGGTCGGGGCACGATAGACGACATCAAATACGT
TGGAAGGGCCCCATCTGCAGCCACCGCAACAGGTTTCTACTCCGTCCATGTGCAGGAGCAAACCGAGCTTGTGCAGAAGG
CACTGCAGCGAGACCCTATCAACTCTCCATTTTGAACCTGTAGATTTTATTTGGATAGCCGTGGGTAATCAAACCTTTGA
TCCAACAGCAAAATTATTGCCTGTGCAGCCATTTGGTGAATAATCCGCTTCGGATGTTTGGTACCGCATGAGAGAAACCA
TTTGAAACCCATGTTGGGATGCATCATTTTGTGTTTCTTAACATCAAATTAAACCAAGTTGCATCCAATGCTTACTTGAG
GAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11872.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis