Browse Element(s) Details


Os.11876.1.S1_s_at

Description gb:AK106192.1
DB_XREF= gi:32991401
TID=Os.11876.1
CNT=39
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.11876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-208-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E03, full insert sequence.
FL= gb:AK106192.1 gb:AK102762.1 gb:AK105936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1418011/11Auxin-responsive protein IAA9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14170Os.18769.1.S1_at11/115+7906427..7915722PQQ enzyme repeat-containing protein, putative, expressed
LOC_Os05g14180Os.11876.1.S1_s_at11/115+7930186..7933694Auxin-responsive protein IAA9, putative, expressed
LOC_Os05g14194Os.22487.1.S1_at11/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14194OsAffx.4331.1.S1_at10/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14210OsAffx.14684.1.S1_at11/115+7947180..7947746hypothetical protein
LOC_Os05g14220OsAffx.26878.1.S1_at11/115+7952449..7955131Protein kinase domain containing protein
LOC_Os05g14220Os.4820.1.S1_at1/115+7952449..7955131Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0009630biological_processgravitropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0010102biological_processlateral root morphogenesis
GO:0040008biological_processregulation of growth
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005837cellular_component26S proteasome
GO:0008180cellular_componentsignalosome complex
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0003700molecular_functiontranscription factor activity
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11876.1.S1_s_at--377--8231Chr05:7932353..7932377 (25 bp)
GGCAAGGATGGCTTATCTGAGAGCC
LOC_Os05g14180
Os.11876.1.S1_s_at--1125--8751Chr05:7932568..7932592 (25 bp)
TGTTTGCCAACTCTTGTCGCAGACT
LOC_Os05g14180
Os.11876.1.S1_s_at--974--6451Chr05:7933295..7933319 (25 bp)
GATAAGTCCAAAAACCGCAACTAGA
LOC_Os05g14180
Os.11876.1.S1_s_at--720--6831Chr05:7933323..7933347 (25 bp)
GTTTCTGCCCCACAGTCAAAAGCAA
LOC_Os05g14180
Os.11876.1.S1_s_at--767--831Chr05:7933408..7933432 (25 bp)
ATGGAGTCTGCCTTATGGTCTGTAC
LOC_Os05g14180
Os.11876.1.S1_s_at--459--9191Chr05:7933416..7933440 (25 bp)
TGCCTTATGGTCTGTACTACATGGT
LOC_Os05g14180
Os.11876.1.S1_s_at--1122--431Chr05:7933494..7933518 (25 bp)
ATCTCCTAGGGACATAAACTCTATT
LOC_Os05g14180
Os.11876.1.S1_s_at--651--2531Chr05:7933510..7933534 (25 bp)
AACTCTATTTGATTGTGCCCAAGTC
LOC_Os05g14180
Os.11876.1.S1_s_at--705--4551Chr05:7933526..7933550 (25 bp)
GCCCAAGTCTTTGTACGTGTGTTAA
LOC_Os05g14180
Os.11876.1.S1_s_at--519--1911Chr05:7933540..7933564 (25 bp)
ACGTGTGTTAATGCTATTCGTGTAA
LOC_Os05g14180
Os.11876.1.S1_s_at--1074--3331Chr05:7933601..7933625 (25 bp)
CACCCCTACCTACTTTGCAAAATGT
LOC_Os05g14180
Target Sequence 
GGCAAGGATGGCTTATCTGAGAGCCGCAAGGATGGTGAATATGTGCTGACTTATGAAGACAAGGATGGAGACTGGATGCT
TGTTGGCGATGTTCCATGGGAGATGTTTGCCAACTCTTGTCGCAGACTCAGGATCATGAAAGGTTCAGATGCAATTGGAC
TTGCTCCAAGGGCAGTTGATAAGTCCAAAAACCGCAACTAGAATGGTTTCTGCCCCACAGTCAAAAGCAAGATGGAGATC
AAATGACTGTAGGGAATTTTCTGAAAACCAAGAAGTCTAACAGTTTTAAGATGGAGTCTGCCTTATGGTCTGTACTACAT
GGTTTGCTATTGTGAAAGTTAAAAAAAAANGGTGTCTTGTTATGTTAGCTTCGCCAAATCTCCTAGGGACATAAACTCTA
TTTGATTGTGCCCAAGTCTTTGTACGTGTGTTAATGCTATTCGTGTAAATGGTTTGGNACACCATGTGCTACTGCTATGA
TTGAGCACCCCTACCTACTTTGCAAAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11876.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis