Browse Element(s) Details


Os.11886.1.S1_at

Description gb:AK099669.1
DB_XREF= gi:32984878
TID=Os.11886.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013068F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068F20, full insert sequence.
FL= gb:AK099669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3674011/11Pollen-specific protein SF21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36710Os.56281.1.S1_at11/116+21613169..21616123transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g36720OsAffx.31069.1.S1_x_at1/116+21618568..21620890retrotransposon protein, putative, unclassified
LOC_Os06g36730OsAffx.20387.1.S1_x_at1/116+21622424..21628581retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g36740Os.11886.1.S1_at11/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36740Os.50340.2.S1_x_at1/116+21636470..21640985Pollen-specific protein SF21, putative, expressed
LOC_Os06g36750OsAffx.5031.4.S1_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.4.S1_x_at11/116+21648057..21648551hypothetical protein
LOC_Os06g36750OsAffx.5031.3.S1_x_at1/116+21648057..21648551hypothetical protein
LOC_Os06g36760OsAffx.15783.1.S1_at11/116+21652898..21653380hypothetical protein
LOC_Os06g36770Os.6155.1.S1_at11/116+21653909..21661474Serine/threonine protein phosphatase 2A, 55 kDa regulatory subunit B,beta isoform, putative, expressed
LOC_Os06g36780OsAffx.27966.1.S1_at11/116+21663958..21664404hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0030154biological_processcell differentiation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11886.1.S1_at--764--4331Chr06:21637066..21637090 (25 bp)
CCATGCTGAGGCTGTTCATATGACC
LOC_Os06g36740
Os.11886.1.S1_at--1124--6731Chr06:21637053..21637077 (25 bp)
GTTCATATGACCTCAAAGCTTGATG
LOC_Os06g36740
Os.11886.1.S1_at--1111--6171Chr06:21636896..21636920 (25 bp)
GAGGAGCAACCGCATGCAATGCTTA
LOC_Os06g36740
Os.11886.1.S1_at--656--9011Chr06:21636882..21636906 (25 bp)
TGCAATGCTTATGCCGCTGGAGTAC
LOC_Os06g36740
Os.11886.1.S1_at--464--7951Chr06:21636848..21636872 (25 bp)
GGATACGGATTGTACAGACCAAGCC
LOC_Os06g36740
Os.11886.1.S1_at--1052--4191Chr06:21636792..21636816 (25 bp)
CCCGTTTTGTATATCGCCAGAACTC
LOC_Os06g36740
Os.11886.1.S1_at--1007--2351Chr06:21636738..21636762 (25 bp)
AAAGCCAATCAAGACGCGGGCCAAT
LOC_Os06g36740
Os.11886.1.S1_at--714--5971Chr06:21636668..21636692 (25 bp)
GAGAACTTAGGCTAACCCGGCAGTC
LOC_Os06g36740
Os.11886.1.S1_at--693--4191Chr06:21636653..21636677 (25 bp)
CCCGGCAGTCGCTGTACTAATATAT
LOC_Os06g36740
Os.11886.1.S1_at--655--231Chr06:21636632..21636656 (25 bp)
ATATCTTCCTAAGTTTTGGAGGCGA
LOC_Os06g36740
Os.11886.1.S1_at--1154--4311Chr06:21636542..21636566 (25 bp)
CCATTCCATTGGTTCGTAGCATTAA
LOC_Os06g36740
Target Sequence 
CCATGCTGAGGCTGTTCATATGACCTCAAAGCTTGATGAGAGATATAGTGCTNTCGTAGAGGTACAAGGATGTGGATNTG
TTGTGACAGAGGAGCAACCGCATGCAATGCTTATGCCGCTGGAGTACTTCCTCATGGGATACGGATTGTACAGACCAAGC
CNAGATAAGCTGCAGCCCTNGTAGCCCCTTGAACCCGTTTTGTATATCGCCAGAACTCCTNTCGCCCGAGAGCATGGGGG
TTAAGCTAAAGCCAATCAAGACGCGGGCCAATNTTGAAGTTTAGGATCGAAAGAGAAAAAAAAAAAAGGTGAAATGTGAG
AACTTAGGCTAACCCGGCAGTCGCTGTACTAATATATCTTCCTAAGTTTTGGAGGCGAGTGAGTTGGTTGTTGTTATTGT
GATGTAGATATTGAGGAAAAAAGCTTAGGTTGAGGCGGGGTTTCCATTCCATTGGTTCGTAGCATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11886.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis