Browse Element(s) Details


Os.11945.1.S1_at

Description gb:AK111606.1
DB_XREF= gi:37988269
TID=Os.11945.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11945 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102P22, full insert sequence.
FL= gb:AK111606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2966011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29650Os.12957.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_x_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650Os.12957.1.S1_x_at9/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29660Os.11945.1.S1_at11/118+18087202..18088908WRKY DNA binding domain containing protein, expressed
LOC_Os08g29680NANA8+18091813..18092070hypothetical protein
LOC_Os08g29690OsAffx.5954.5.S1_x_at5/118+18095767..18101049retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29690OsAffx.5954.4.S1_x_at3/118+18095767..18101049retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g29700OsAffx.5954.3.S1_x_at3/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29700OsAffx.5954.1.S1_x_at1/118+18106864..18109009Zinc knuckle family protein
LOC_Os08g29710Os.21565.1.S1_at11/118+18110740..18116601beta 1,3-glycosyltransferase-like protein I, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005730cellular_componentnucleolus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11945.1.S1_at--305--1831Chr08:18088370..18088394 (25 bp)
ACGCCGAGCTTCTTCCTATGAGGAA
LOC_Os08g29660
Os.11945.1.S1_at--219--1511Chr08:18088415..18088439 (25 bp)
AGCAGAGGCCCTGTCCATCCATGGT
LOC_Os08g29660
Os.11945.1.S1_at--281--4891Chr08:18088468..18088492 (25 bp)
GCTTTGCTCTTCAAGGCTTGAGCTT
LOC_Os08g29660
Os.11945.1.S1_at--577--10751Chr08:18088485..18088509 (25 bp)
TTGAGCTTCTTCTTCCTAAGTAAGA
LOC_Os08g29660
Os.11945.1.S1_at--4--10451Chr08:18088538..18088562 (25 bp)
TTAGGATATCTCTTGTTTCTATTCT
LOC_Os08g29660
Os.11945.1.S1_at--691--10671Chr08:18088572..18088596 (25 bp)
TTCCTTTTGTTTCTCCCAACTCTCT
LOC_Os08g29660
Os.11945.1.S1_at--679--9511Chr08:18088594..18088618 (25 bp)
TCTCTCATGGAGTTTGGATTTTGCT
LOC_Os08g29660
Os.11945.1.S1_at--897--7931Chr08:18088609..18088633 (25 bp)
GGATTTTGCTGGTTTCTGTCAAGCA
LOC_Os08g29660
Os.11945.1.S1_at--414--1011Chr08:18088728..18088752 (25 bp)
AGGTTCAACCTTTCTGTTATCCATC
LOC_Os08g29660
Os.11945.1.S1_at--793--9451Chr08:18088740..18088764 (25 bp)
TCTGTTATCCATCTTGCCAATTAGT
LOC_Os08g29660
Os.11945.1.S1_at--353--7631Chr08:18088800..18088824 (25 bp)
GGGACAGCAATTCATATCTTGACAT
LOC_Os08g29660
Target Sequence 
ACGCCGAGCTTCTTCCTATGAGGAAGAAAAGCCATAGCAGAGCAGAGCAGAGGCCCTGTCCATCCATGGTGGCAGGAGGG
AAGAAGAGGAAAGCTTAAGCTTTGCTCTTCAAGGCTTGAGCTTCTTCTTCCTAAGTAAGATCAGTGCAGGTGTAAGCAGT
AATTTAGCTTAGGATATCTCTTGTTTCTATTCTTTCTTTAATTTCCTTTTGTTTCTCCCAACTCTCTCTCATGGAGTTTG
GATTTTGCTGGTTTCTGTCAAGCAAAAGAGAGGAAAATAAGAAGATTTTGTTACTACTGTTCNNANNAANNNAAAAGTGA
GATTTGTTTGGAGAATGATTCACTTTTTTGGGGAGAAAAGGTTCAACCTTTCTGTTATCCATCTTGCCAATTAGTGGATG
GATGAGAGAGAGCCTAGGCATGAAACTGTAGGGACAGCAATTCATATCTTGACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11945.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis