Browse Element(s) Details


OsAffx.17230.1.S1_at

Description tigr:9636.m02945
TID=OsAffx.17230.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to At1g07350F22G5_25
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2965010/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29610OsAffx.29420.1.S1_at11/118+18032630..18034006hypothetical protein
LOC_Os08g29630OsAffx.28472.1.S1_x_at11/118+18047792..18047992hypothetical protein
LOC_Os08g29630OsAffx.31730.1.S1_x_at2/118+18047792..18047992hypothetical protein
LOC_Os08g29640OsAffx.29421.1.S1_at8/118+18051761..18052636hypothetical protein
LOC_Os08g29650Os.12957.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650OsAffx.17230.1.S1_x_at10/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29650Os.12957.1.S1_x_at9/118+18056582..18062891transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g29660Os.11945.1.S1_at11/118+18087202..18088908WRKY DNA binding domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17230.1.S1_at--83--6271Chr08:18060508..18060532 (25 bp)
GATGTATAGGGAAGCTACAACCTTG
LOC_Os08g29650
OsAffx.17230.1.S1_at--906--1071Chr08:18060515..18060535 (21 bp)
AGGGAAGCTACAACCTTGCAATGTG
LOC_Os08g29650
OsAffx.17230.1.S1_at--748--2611Chr08:18060526..18060686 (25 bp)
AACCTTGCAATGTGAGAATGGAGAA
LOC_Os08g29650
OsAffx.17230.1.S1_at--877--831Chr08:18060679..18060703 (25 bp)
ATGGAGAAAGACCTCTTCTCTGCCT
LOC_Os08g29650
OsAffx.17230.1.S1_at--979--5971Chr08:18060682..18060706 (25 bp)
GAGAAAGACCTCTTCTCTGCCTGTT
LOC_Os08g29650
OsAffx.17230.1.S1_at--857--4291Chr08:18060690..18060714 (25 bp)
CCTCTTCTCTGCCTGTTCAAATGGG
LOC_Os08g29650
OsAffx.17230.1.S1_at--657--7691Chr08:18060713..18060737 (25 bp)
GGGTCTTAACTCCTCGTGCTGACTT
LOC_Os08g29650
OsAffx.17230.1.S1_at--164--9811Chr08:18060719..18060743 (25 bp)
TAACTCCTCGTGCTGACTTCCTGAA
LOC_Os08g29650
OsAffx.17230.1.S1_at--252--4751Chr08:18060730..18060754 (25 bp)
GCTGACTTCCTGAACTTCCAGTTTA
LOC_Os08g29650
OsAffx.17230.1.S1_at--498--5691Chr08:18060733..18060757 (25 bp)
GACTTCCTGAACTTCCAGTTTATAT
LOC_Os08g29650
OsAffx.17230.1.S1_at--477--10491NONE
TTCCAGTTTATATGGCTAAAAGAAC
NONE
Target Sequence 
GATGTATAGGGAAGCTACAACCTTGCAATGTGAGAATGGAGAAAGACCTCTTCTCTGCCTGTTCAAATGGGGTCTTAACT
CCTCGTGCTGACTTCCTGAACTTCCAGTTTATATGGCTAAAAGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis