Browse Element(s) Details


Os.11971.1.S1_at

Description gb:AK072434.1
DB_XREF= gi:32982457
TID=Os.11971.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11971 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023099I05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023099I05, full insert sequence.
FL= gb:AK072434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1281011/11Maf family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12790OsAffx.25076.1.S1_at11/113+6833233..6835499MATE efflux family protein, expressed
LOC_Os03g12800NANA3+6836992..6837476hypothetical protein
LOC_Os03g12810Os.11971.1.S1_at11/113+6850918..6854501Maf family protein, putative, expressed
LOC_Os03g12820Os.8741.1.S1_at11/113+6874291..6877468Poly polymerase catalytic domain containing protein, expressed
LOC_Os03g12830OsAffx.3214.1.S1_at11/113+6878954..6879414hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11971.1.S1_at--823--5851Chr03:6852430..6852454 (25 bp)
GAGAAAAACCTAGCACCCCAGAAGA
LOC_Os03g12810
Os.11971.1.S1_at--610--7951Chr03:6852293..6852317 (25 bp)
GGATACTCCGAAAGCCATGCAGCGA
LOC_Os03g12810
Os.11971.1.S1_at--167--771Chr03:6851389..6851413 (25 bp)
ATGTCTTCTATGTTGCCGGTGGCCT
LOC_Os03g12810
Os.11971.1.S1_at--531--8951Chr03:6851347..6851371 (25 bp)
TGACTTCACCTCTTGTGGAAGCTAT
LOC_Os03g12810
Os.11971.1.S1_at--931--5391Chr03:6851229..6851354 (25 bp)
GAAGCTATTGTTGGCACCATCGACA
LOC_Os03g12810
Os.11971.1.S1_at--1038--9351Chr03:6851210..6851234 (25 bp)
TCGACAGTGTAATGGGACTCCCGAA
LOC_Os03g12810
Os.11971.1.S1_at--193--3051Chr03:6851186..6851210 (25 bp)
AATCCCTCACGGAGAAGCTGATCAA
LOC_Os03g12810
Os.11971.1.S1_at--229--7251Chr03:6851158..6851182 (25 bp)
GTCCCTTGAGGAGCCATAGCTATTT
LOC_Os03g12810
Os.11971.1.S1_at--872--3851Chr03:6851118..6851142 (25 bp)
CTGACTGCCCATGCTGAAGTTCATA
LOC_Os03g12810
Os.11971.1.S1_at--949--1471Chr03:6851089..6851113 (25 bp)
AGAATTTTTCACTCATCTGCTGCAC
LOC_Os03g12810
Os.11971.1.S1_at--1090--5691Chr03:6850997..6851021 (25 bp)
GACTATGCTAAGCTACTTGCCGTGA
LOC_Os03g12810
Target Sequence 
GAGAAAAACCTAGCACCCCAGAAGAGGCACGAAAGTTCATCAAAGGATACTCCGAAAGCCATGCAGCGACAATTGGATCT
GTTCTTGTTACTAATGTGAAAAGTGGAGCCAGAAAGGAAGGATGGGACAAAGCTGAAGTTTATTTCCATAAGATACCCGA
TGAAGTTGTTGAGAGTTTGATTGAGGAGGGCGATGTCTTCTATGTTGCCGGTGGCCTGCTGGTAGAGCACCCGCTGACTT
CACCTCTTGTGGAAGCTATTGTTGGCACCATCGACAGTGTAATGGGACTCCCGAAATCCCTCACGGAGAAGCTGATCAAG
GAGTCCCTTGAGGAGCCATAGCTATTTTTTTTACCGGGACAACTGACTGCCCATGCTGAAGTTCATATGCTAGAATTTTT
CACTCATCTGCTGCACAACCAACTCGTCATCCACTCTGCTTGGATTGGAGGATGGAGATGCATCTTACCGATGTTGTCAG
CTTGACTATGCTAAGCTACTTGCCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11971.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis