Browse Element(s) Details


Os.8741.1.S1_at

Description gb:AK102303.1
DB_XREF= gi:32987512
TID=Os.8741.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.8741 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089O13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089O13, full insert sequence.
FL= gb:AK102303.1 gb:AK058934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1282011/11Poly polymerase catalytic domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12810Os.11971.1.S1_at11/113+6850918..6854501Maf family protein, putative, expressed
LOC_Os03g12820Os.8741.1.S1_at11/113+6874291..6877468Poly polymerase catalytic domain containing protein, expressed
LOC_Os03g12830OsAffx.3214.1.S1_at11/113+6878954..6879414hypothetical protein
LOC_Os03g12840Os.2488.1.S1_at11/113+6881231..6886590inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g12850OsAffx.3215.1.S1_at11/113+6887259..6888246hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000303biological_processresponse to superoxide
GO:0006979biological_processresponse to oxidative stress
GO:0009723biological_processresponse to ethylene stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0010193biological_processresponse to ozone
GO:0012501biological_processprogrammed cell death
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8741.1.S1_at--790--8791Chr03:6876001..6876025 (25 bp)
TGTTCCCTATGCTTCTGACGGAGAT
LOC_Os03g12820
Os.8741.1.S1_at--62--5751Chr03:6876017..6876041 (25 bp)
GACGGAGATCCAGCGGTTCGTTCCA
LOC_Os03g12820
Os.8741.1.S1_at--199--6191Chr03:6876065..6876086 (22 bp)
GAGGACGTACAACTGCTTCAAGAGA
LOC_Os03g12820
Os.8741.1.S1_at--152--5611Chr03:6877078..6877102 (25 bp)
GACAATGTGTTGACCACCGTGGCCA
LOC_Os03g12820
Os.8741.1.S1_at--654--7771Chr03:6877128..6877152 (25 bp)
GGTGCAAATTTGTCTCCACTCCGTG
LOC_Os03g12820
Os.8741.1.S1_at--702--1991Chr03:6877145..6877169 (25 bp)
ACTCCGTGGCTGAATTCGACTAACT
LOC_Os03g12820
Os.8741.1.S1_at--855--5491Chr03:6877180..6877204 (25 bp)
GAACAGTGCGTGTCGTGTACCAATC
LOC_Os03g12820
Os.8741.1.S1_at--1068--3031Chr03:6877201..6877225 (25 bp)
AATCCTGACAGGGTTTATTCTCTTC
LOC_Os03g12820
Os.8741.1.S1_at--742--111Chr03:6877217..6877241 (25 bp)
ATTCTCTTCTGATGCTGCTTTAGTT
LOC_Os03g12820
Os.8741.1.S1_at--1099--9071Chr03:6877232..6877256 (25 bp)
TGCTTTAGTTTTTCCGGTGCTCAAA
LOC_Os03g12820
Os.8741.1.S1_at--995--7671Chr03:6877281..6877305 (25 bp)
GGGTTTACTGTGATCTTCCAATTAA
LOC_Os03g12820
Target Sequence 
TGTTCCCTATGCTTCTGACGGAGATCCAGCGGTTCGTTCCATCCCCGAAGCTGCAGACTTTGCAGAGGACGTACAACTGC
TTCAAGAGAGGACAGATGAAGAAGGACCAGTTCATCCGGTTCTTGCGCTCCCACATCGGCGACAATGTGTTGACCACCGT
GGCCAAGAAACTCCGAGGGTACTAGTGCAAGGTGCAAATTTGTCTCCACTCCGTGGCTGAATTCGACTAACTCCGTAGAA
TCGAACAGTGCGTGTCGTGTACCAATCCTGACAGGGTTTATTCTCTTCTGATGCTGCTTTAGTTTTTCCGGTGCTCAAAT
GTTTATTGTCATGAACATAGAGGGGGTTTACTGTGATCTTCCAATTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis