Browse Element(s) Details


Os.12088.1.S1_at

Description gb:AK068347.1
DB_XREF= gi:32978365
TID=Os.12088.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12088 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013150F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013150F06, full insert sequence.
FL= gb:AK068347.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1455011/11Signal recognition particle 9 kDa protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14530Os.12298.1.S1_at11/116+8175720..8176754expressed protein
LOC_Os06g14530OsAffx.27637.1.S1_at1/116+8175720..8176754expressed protein
LOC_Os06g14540Os.51106.1.S1_at11/116+8177992..8183623Endoglucanase 1 precursor, putative, expressed
LOC_Os06g14550Os.12088.1.S1_at11/116+8193484..8197031Signal recognition particle 9 kDa protein, putative, expressed
LOC_Os06g14560OsAffx.15425.1.S1_at11/116+8198009..8199201hypothetical protein
LOC_Os06g14570Os.27691.1.S1_x_at2/116+8202785..8206594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14580NANA6+8208749..8209072hypothetical protein
LOC_Os06g14590NANA6+8210536..8216646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14600NANA6+8216962..8219918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14610NANA6+8221479..8223416retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005047molecular_functionsignal recognition particle binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12088.1.S1_at--1088--10251Chr06:8194131..8194155 (25 bp)
TTTGTTATAACATGCGCTCTCCTGT
LOC_Os06g14550
Os.12088.1.S1_at--550--4811Chr06:8194116..8194140 (25 bp)
GCTCTCCTGTACTACTGTAACTGTT
LOC_Os06g14550
Os.12088.1.S1_at--1063--8751Chr06:8194060..8194084 (25 bp)
TGTATTCTGGTGTCAATTGCGTATA
LOC_Os06g14550
Os.12088.1.S1_at--859--231Chr06:8194023..8194047 (25 bp)
ATAGGAACTACTTTGCTGACCGAAA
LOC_Os06g14550
Os.12088.1.S1_at--1061--5811Chr06:8194006..8194030 (25 bp)
GACCGAAATGTATACTGCAGTGCTT
LOC_Os06g14550
Os.12088.1.S1_at--206--10371Chr06:8193922..8193946 (25 bp)
TTTTTACTCTCATGACCCATGGACC
LOC_Os06g14550
Os.12088.1.S1_at--804--8931Chr06:8193817..8193934 (25 bp)
TGACCCATGGACCTGATGCTGATAT
LOC_Os06g14550
Os.12088.1.S1_at--583--31Chr06:8193719..8193743 (25 bp)
ATTGGGTCTGTCTTGATTTTGTTCA
LOC_Os06g14550
Os.12088.1.S1_at--972--7511Chr06:8193673..8193697 (25 bp)
GTGGATGGACATTTTGGCTCTTTGA
LOC_Os06g14550
Os.12088.1.S1_at--1127--10231Chr06:8193661..8193685 (25 bp)
TTTGGCTCTTTGATTGCTCTCGTAA
LOC_Os06g14550
Os.12088.1.S1_at--372--8831Chr06:8193651..8193675 (25 bp)
TGATTGCTCTCGTAATGTTCTGAAG
LOC_Os06g14550
Target Sequence 
TTTGTTATAACATGCGCTCTCCTGTACTACTGTAACTGTTGTAATATTCCATTGTATTTGATTAAAGACATTGTATTCTG
GTGTCAATTGCGTATATGTATGATCCAAATAGGAACTACTTTGCTGACCGAAATGTATACTGCAGTGCTTGAAGTTTAAN
GACAGATCAAGCTCAGGATGCAAAGAAGATGGAAAAACTGAACACCATTTTTTTTACTCTCATGACCCATGGACCTGATG
CTGATATAAGTGATGTTTCGGGGAAGGAACAGGCAGAACAACAGCAATCAAAGAAAGGCCGGGGCAGGAGGCAGTAGTGT
ATTGGGTCTGTCTTGATTTTGTTCAAAGTAAATCATAACTGAAGTGGTGGATGGACATTTTGGCTCTTTGATTGCTCTCG
TAATGTTCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12088.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis