Browse Element(s) Details


Os.12298.1.S1_at

Description gb:AU183070
DB_XREF= gi:13896734
DB_XREF=AU183070
CLONE=E41076
TID=Os.12298.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12298 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1453011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14510Os.4697.1.S1_at11/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14510Os.57457.1.S1_x_at2/116+8151445..8158386Glucose-6-phosphate isomerase, cytosolic B, putative, expressed
LOC_Os06g14520NANA6+8162528..8162758hypothetical protein
LOC_Os06g14530Os.12298.1.S1_at11/116+8175720..8176754expressed protein
LOC_Os06g14530OsAffx.27637.1.S1_at1/116+8175720..8176754expressed protein
LOC_Os06g14540Os.51106.1.S1_at11/116+8177992..8183623Endoglucanase 1 precursor, putative, expressed
LOC_Os06g14550Os.12088.1.S1_at11/116+8193484..8197031Signal recognition particle 9 kDa protein, putative, expressed
LOC_Os06g14560OsAffx.15425.1.S1_at11/116+8198009..8199201hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12298.1.S1_at--715--4451Chr06:8176434..8176458 (25 bp)
GCCTCCTCGTCATTGGCGAGGCTGC
LOC_Os06g14530
Os.12298.1.S1_at--941--7691Chr06:8176510..8176534 (25 bp)
GGGTCATTCTTGTAATTAAGCAGCT
LOC_Os06g14530
Os.12298.1.S1_at--689--2871Chr06:8176555..8176579 (25 bp)
AAGTGGAGTGAACGCTTCTTTCTTT
LOC_Os06g14530
Os.12298.1.S1_at--782--8551Chr06:8176558..8176582 (25 bp)
TGGAGTGAACGCTTCTTTCTTTTTT
LOC_Os06g14530
Os.12298.1.S1_at--145--9531Chr06:8176582..8176606 (25 bp)
TCTCTTCCTCCCATGGATTCTTTTG
LOC_Os06g14530
Os.12298.1.S1_at--1030--9311Chr06:8176590..8176614 (25 bp)
TCCCATGGATTCTTTTGCTCTTGTC
LOC_Os06g14530
Os.12298.1.S1_at--716--7931Chr06:8176596..8176620 (25 bp)
GGATTCTTTTGCTCTTGTCCTCTTC
LOC_Os06g14530
Os.12298.1.S1_at--1074--6551Chr06:8176649..8176673 (25 bp)
GATTACTATTTTGCTTTGGACCTTT
LOC_Os06g14530
Os.12298.1.S1_at--1063--4871Chr06:8176661..8176685 (25 bp)
GCTTTGGACCTTTAGCTCAGTACAA
LOC_Os06g14530
Os.12298.1.S1_at--978--7931Chr06:8176666..8176690 (25 bp)
GGACCTTTAGCTCAGTACAAACTTG
LOC_Os06g14530
Os.12298.1.S1_at--477--10791Chr06:8176688..8176712 (25 bp)
TTGTTTATGCCCTACCCCTTTTGCT
LOC_Os06g14530
Target Sequence 
GCCTCCTCGTCATTGGCGAGGCTGCCGGTGTTGCTCACCGGCATCTGCAGCGGCGGCGCCGGGTAGCGCCGGTCGGGGGT
CATTCTTGTAATTAAGCAGCTGTCGAGGGGTGATTATGTGAAAGTGGAGTGAACGCTTCTTTCTTTTTTCTCTTCCTCCC
ATGGATTCTTTTGCTCTTGTCCTCTTCTGTTCCTTTTCTTGTTTTTTCAAGGAATGATTACTATTTTGCTTTGGACCTTT
AGCTCAGTACAAACTTGTTTATGCCCTACCCCTTTTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12298.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis