Browse Element(s) Details


OsAffx.15425.1.S1_at

Description tigr:9634.m01455
TID=OsAffx.15425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1456011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g14530Os.12298.1.S1_at11/116+8175720..8176754expressed protein
LOC_Os06g14530OsAffx.27637.1.S1_at1/116+8175720..8176754expressed protein
LOC_Os06g14540Os.51106.1.S1_at11/116+8177992..8183623Endoglucanase 1 precursor, putative, expressed
LOC_Os06g14550Os.12088.1.S1_at11/116+8193484..8197031Signal recognition particle 9 kDa protein, putative, expressed
LOC_Os06g14560OsAffx.15425.1.S1_at11/116+8198009..8199201hypothetical protein
LOC_Os06g14570Os.27691.1.S1_x_at2/116+8202785..8206594retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14580NANA6+8208749..8209072hypothetical protein
LOC_Os06g14590NANA6+8210536..8216646retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14600NANA6+8216962..8219918retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g14610NANA6+8221479..8223416retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15425.1.S1_at--532--2711Chr06:8198216..8198240 (25 bp)
AAGCACGTCGTTGACAGCTTTGCCG
LOC_Os06g14560
OsAffx.15425.1.S1_at--193--4191Chr06:8198241..8198265 (25 bp)
CCCCGCTGACAGAGGTCGATCGAGA
LOC_Os06g14560
OsAffx.15425.1.S1_at--1156--2711Chr06:8198269..8198293 (25 bp)
AAGCAGTGTCCAAGAAGCCTGTCTT
LOC_Os06g14560
OsAffx.15425.1.S1_at--229--2751Chr06:8198280..8198304 (25 bp)
AAGAAGCCTGTCTTCTGGTGCTACT
LOC_Os06g14560
OsAffx.15425.1.S1_at--118--8611Chr06:8198295..8198319 (25 bp)
TGGTGCTACTTCCTGGACGGCATCG
LOC_Os06g14560
OsAffx.15425.1.S1_at--353--2251Chr06:8198344..8198368 (25 bp)
AAATTCATTCGCTTGCATTGCTGGT
LOC_Os06g14560
OsAffx.15425.1.S1_at--400--7971Chr06:8198399..8198423 (25 bp)
GGATCCGGCCATGGTGCTGCACACG
LOC_Os06g14560
OsAffx.15425.1.S1_at--150--7651Chr06:8198429..8198453 (25 bp)
GGGAGCACCCCAACGGAGCTACTAC
LOC_Os06g14560
OsAffx.15425.1.S1_at--812--5911Chr06:8198444..8198468 (25 bp)
GAGCTACTACGGATGCGCCGGGACA
LOC_Os06g14560
OsAffx.15425.1.S1_at--784--1631Chr06:8199049..8199073 (25 bp)
AGCGTGGAGCTCGTTGGCCGCCTCT
LOC_Os06g14560
OsAffx.15425.1.S1_at--1008--9551Chr06:8199071..8199095 (25 bp)
TCTTGTCATCGGAGTTCATAGGGAC
LOC_Os06g14560
Target Sequence 
AAGCACGTCGTTGACAGCTTTGCCGCCCCGCTGACAGAGGTCGATCGAGATGGAAGCAGTGTCCAAGAAGCCTGTCTTCT
GGTGCTACTTCCTGGACGGCATCGCTCGCTTGCCTCCAAGCCCTCTAAAAATTCATTCGCTTGCATTGCTGGTTTAAGCA
GGAAGGAGGATGGCAACCTTGCCGGATCCGGCCATGGTGCTGCACACGGCGGCGGGAGCACCCCAACGGAGCTACTACGG
ATGCGCCGGGACAGCGGCGATGGTGACAGCGCTGCCTGCGCGGCGGAGGTCGATGAGGCGGGAGAGGCACGAGGCAGGAG
GAGGTCCGGCGGTGACGCGTGTTCTGGGAGCAATGGAGGGGATGTGGAGGAAGACCAAGAAGGCGTTGGGCGCCGGCCTT
TGCGCGTGGAGCTCGCCGAGGAAGAGAGAGATGAAGGAGAGGAGAGCGTGGAGCTCGTTGGCCGCCTCTTGTCATCGGAG
TTCATAGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis