Browse Element(s) Details


Os.12100.1.S1_at

Description gb:AU172639
DB_XREF= gi:12622426
DB_XREF=AU172639
CLONE=E3087
TID=Os.12100.1
CNT=10
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.12100 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_177735.1 (A.thaliana) chloroplast drought-induced stress protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2941011/11thioredoxin family protein, putative, expressed
LOC_Os04g038401/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g29360Os.18377.3.S1_x_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29360Os.18377.1.S1_a_at11/117+17228574..17243580TPR repeat nuclear phosphoprotein, putative, expressed
LOC_Os07g29370OsAffx.22325.1.S1_at10/117+17247907..17248424hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29380OsAffx.31578.1.S1_x_at10/117+17250473..17252592hypothetical protein
LOC_Os07g29390OsAffx.10094.1.A1_x_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390Os.20031.1.S1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29390OsAffx.10094.1.A1_at11/117+17253240..17258865peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g29400NANA7+17263837..17264325hypothetical protein
LOC_Os07g29410Os.12100.1.S1_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29410Os.52278.1.S1_s_at11/117+17266971..17268414thioredoxin family protein, putative, expressed
LOC_Os07g29420Os.37227.1.S1_at11/117+17269209..17272584RNA polymerase Rpb7, N-terminal domain containing protein, expressed
LOC_Os07g29430OsAffx.16475.1.S1_at11/117+17273178..17273792hypothetical protein
LOC_Os07g29440NANA7+17274496..17274990S-adenosylmethionine synthetase 1, putative
LOC_Os07g29450Os.11483.1.S1_at11/117+17275926..17281914expressed protein
LOC_Os07g29450Os.11483.2.S1_at11/117+17275926..17281914expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005829cellular_componentcytosol
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12100.1.S1_at--839--10251Chr07:17268249..17268273 (25 bp)
TTTGATCAAACCTATCTCGTTGATT
LOC_Os07g29410
Os.12100.1.S1_at--228--472Chr07:17268570..17268594 (25 bp)
ATCTCGTTGATTTGGTCCCGTGTAA
NONE
Os.12100.1.S1_at--40--3772Chr07:17268572..17268596 (25 bp)
CTCGTTGATTTGGTCCCGTGTAATA
NONE
Os.12100.1.S1_at--94--4031Chr07:17268266..17268290 (25 bp)
CGTTGATTTGGTCCCGTGTAATACT
LOC_Os07g29410
Os.12100.1.S1_at--53--4312Chr07:17268270..17268294 (25 bp)
GATTTGGTCCCGTGTAATACTAGAA
LOC_Os07g29410
Os.12100.1.S1_at--136--10252Chr07:17268272..17268296 (25 bp)
TTTGGTCCCGTGTAATACTAGAATT
LOC_Os07g29410
Os.12100.1.S1_at--738--7272Chr07:17268275..17268299 (25 bp)
GGTCCCGTGTAATACTAGAATTTTG
LOC_Os07g29410
Os.12100.1.S1_at--373--7072Chr07:17268283..17268307 (25 bp)
GTAATACTAGAATTTTGGAACGTCA
LOC_Os07g29410
Os.12100.1.S1_at--1074--5192Chr07:17268603..17268627 (25 bp)
GAATTTTGGAACGTCAATTGCAAGT
NONE
Os.12100.1.S1_at--341--10872Chr07:17268608..17268632 (25 bp)
TTGGAACGTCAATTGCAAGTTCGAG
NONE
Os.12100.1.S1_at--270--3233Chr07:17268623..17268647 (25 bp)
CAAGTTCGAGACTTGATTTTGCCTA
NONE
Target Sequence 
TTTGATCAAACCTATCTCGTTGATTTGGTCCCGTGTAATACTAGAATTTTGGAACGTCAATTGCAAGTTCGAGACTTGAT
TTTGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12100.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis