Browse Element(s) Details


Os.12191.1.S1_x_at

Description gb:U76030.1
DB_XREF= gi:2058499
TID=Os.12191.1
CNT=54
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.12191 (NCBI UniGene Cluster)
DEF=Oryza sativa hemoglobin 1 mRNA, complete cds.
PROD=hemoglobin 1
FL= gb:AK064054.1 gb:U76030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1314011/11Non-symbiotic hemoglobin 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein
LOC_Os03g13089NANA3+7051970..7052332NA
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed
LOC_Os03g13110OsAffx.31816.1.S1_at3/113+7058666..7061399transposon protein, putative, Mariner sub-class
LOC_Os03g13120Os.53257.1.S1_at5/113+7061831..7063710hypothetical protein
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_s_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13140Os.12191.1.S1_x_at11/113+7071852..7073121Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g13150Os.12191.1.S1_s_at2/113+7075783..7076623Non-symbiotic hemoglobin 3, putative
LOC_Os03g13160Os.12191.1.S1_s_at2/113+7079290..7080322Non-symbiotic hemoglobin 4, putative
LOC_Os03g13170Os.12772.1.S1_at11/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13170Os.51218.1.S1_at1/113+7081245..7083866ubiquitin fusion protein, putative, expressed
LOC_Os03g13180OsAffx.3220.1.S1_at11/113+7086366..7087553Peroxidase 53 precursor, putative, expressed
LOC_Os03g13190OsAffx.3221.1.S1_at11/113+7090057..7094241transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005344molecular_functionoxygen transporter activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12191.1.S1_x_at--824--8051Chr03:7072630..7072769 (25 bp)
GGAGACGCCCACTTCGAGGTGGTGA
LOC_Os03g13140
Os.12191.1.S1_x_at--607--7351Chr03:7072766..7072790 (25 bp)
GTGAAGTTCGCGCTGCTTGACACGA
LOC_Os03g13140
Os.12191.1.S1_x_at--380--8991Chr03:7072767..7072791 (25 bp)
TGAAGTTCGCGCTGCTTGACACGAT
LOC_Os03g13140
Os.12191.1.S1_x_at--203--5411Chr03:7072847..7072871 (25 bp)
GAAGCCTACGACCACCTGGTCGCTG
LOC_Os03g13140
Os.12191.1.S1_x_at--223--4091Chr03:7072855..7072879 (25 bp)
CGACCACCTGGTCGCTGCCATCAAG
LOC_Os03g13140
Os.12191.1.S1_x_at--88--671Chr03:7072886..7072910 (25 bp)
ATGAAGCCCGCGGAGTGATCGACAG
LOC_Os03g13140
Os.12191.1.S1_x_at--1098--9331Chr03:7072945..7072969 (25 bp)
TCGCGAGTCCGATTAGCTTTTGTTG
LOC_Os03g13140
Os.12191.1.S1_x_at--543--6831Chr03:7072983..7073007 (25 bp)
GTTTCATATTCATCGTGTCCCACAA
LOC_Os03g13140
Os.12191.1.S1_x_at--107--4291Chr03:7073047..7073071 (25 bp)
CCTGCTGTTTTCTTCTCGTGATAAG
LOC_Os03g13140
Os.12191.1.S1_x_at--1027--4731Chr03:7073050..7073074 (25 bp)
GCTGTTTTCTTCTCGTGATAAGACA
LOC_Os03g13140
Os.12191.1.S1_x_at--331--6811Chr03:7073053..7073077 (25 bp)
GTTTTCTTCTCGTGATAAGACATAA
LOC_Os03g13140
Target Sequence 
GGAGACGCCCACTTCGAGGTGGTGAAGTTCGCGCTGCTTGACACGATCAAGGAGGAGGTTCCGGCGGACATGTGGAGCCC
GGCGATGAAGAGCGCGTGGAGCGAAGCCTACGACCACCTGGTCGCTGCCATCAAGCAGGAGATGAAGCCCGCGGAGTGAT
CGACAGGCATGCTAGCTGCTCCACCTCCATGATCCTCGCCTCGCGAGTCCGATTAGCTTTTGTTGCTTTCAAATGCTCGT
TTCATATTCATCGTGTCCCACAAAAAAAGGAGTGTGTATGTGGTGTACGATTGGTGCACGCTCCTGCTGTTTTCTTCTCG
TGATAAGACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12191.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis