Browse Element(s) Details


Os.12191.1.S1_s_at

Description gb:U76030.1
DB_XREF= gi:2058499
TID=Os.12191.1
CNT=54
FEA=FLmRNA
TIER=FL+Stack
STK=20
UG=Os.12191 (NCBI UniGene Cluster)
DEF=Oryza sativa hemoglobin 1 mRNA, complete cds.
PROD=hemoglobin 1
FL= gb:AK064054.1 gb:U76030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1251011/11Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g1314011/11Non-symbiotic hemoglobin 1, putative, expressed
LOC_Os03g131502/11Non-symbiotic hemoglobin 3, putative
LOC_Os03g131602/11Non-symbiotic hemoglobin 4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12480OsAffx.25860.5.S1_at4/113+6576958..6580061hypothetical protein
LOC_Os03g12490OsAffx.25860.1.S1_x_at11/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490Os.12304.1.S1_at6/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12490OsAffx.25860.2.S1_x_at5/113+6581278..6585396transposon protein, putative, unclassified
LOC_Os03g12500Os.7678.1.S1_at11/113+6587692..6589708Cytochrome P450 74A2, putative, expressed
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0009735biological_processresponse to cytokinin stimulus
GO:0005344molecular_functionoxygen transporter activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12191.1.S1_s_at--300--10754Chr03:7079410..7079526 (25 bp)
TTGAAGATCTTCGAGGTCGCGCCGT
LOC_Os03g13160
Os.12191.1.S1_s_at--922--8994Chr03:7079507..7079527 (21 bp)
TGAAGATCTTCGAGGTCGCGCCGTC
LOC_Os03g13160
Os.12191.1.S1_s_at--1154--7172Chr03:7072339..7072363 (25 bp)
GTCGGCGAGCCAGATGTTCTCGTTC
LOC_Os03g13140
Os.12191.1.S1_s_at--688--9392Chr03:7072358..7072382 (25 bp)
TCGTTCCTGCGCAACTCCGACGTGC
LOC_Os03g13140
Os.12191.1.S1_s_at--598--2692Chr03:7072400..7072424 (25 bp)
AAGCTCAAGACCCACGCCATGTCCG
LOC_Os03g13140
Os.12191.1.S1_s_at--336--4432Chr03:7072415..7072435 (21 bp)
GCCATGTCCGTCTTCGTCATGACAT
LOC_Os03g13140
Os.12191.1.S1_s_at--442--4332Chr03:7072416..7072535 (25 bp)
CCATGTCCGTCTTCGTCATGACATG
LOC_Os03g13140
Os.12191.1.S1_s_at--474--4152Chr03:7072545..7072569 (25 bp)
CGCGCAGCTGCGGAAAGCCGGGAAG
LOC_Os03g13140
Os.12191.1.S1_s_at--916--3372Chr03:7072549..7072573 (25 bp)
CAGCTGCGGAAAGCCGGGAAGGTCA
LOC_Os03g13140
Os.12191.1.S1_s_at--607--7612Chr03:7072564..7072588 (25 bp)
GGGAAGGTCACCGTGAGAGACACCA
LOC_Os03g13140
Os.12191.1.S1_s_at--67--2912Chr03:7072567..7072591 (25 bp)
AAGGTCACCGTGAGAGACACCACCC
LOC_Os03g13140
Target Sequence 
TTGAAGATCTTCGAGGTCGCGCCGTCGGCGAGCCAGATGTTCTCGTTCCTGCGCAACTCCGACGTGCCGCTCGAGAAGAA
CCCCAAGCTCAAGACCCACGCCATGTCCGTCTTCGTCATGACATGCGAGGCCGCCGCGCAGCTGCGGAAAGCCGGGAAGG
TCACCGTGAGAGACACCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12191.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis