Browse Element(s) Details


Os.34767.1.S1_at

Description gb:AK065961.1
DB_XREF= gi:32975979
TID=Os.34767.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34767 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OSJNBa0081P02.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043M15, full insert sequence.
FL= gb:AK070223.1 gb:AK065961.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1253011/11Metal tolerance protein C3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12510Os.12163.1.S1_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12510Os.12191.1.S1_s_at11/113+6604090..6605196Non-symbiotic hemoglobin 2, putative, expressed
LOC_Os03g12520Os.43916.1.S1_at11/113+6606076..6609359Protein kinase domain containing protein, expressed
LOC_Os03g12530Os.34767.1.S1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.34767.2.S1_s_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12530Os.15382.1.A1_at11/113+6615790..6620665Metal tolerance protein C3, putative, expressed
LOC_Os03g12540OsAffx.25069.1.S1_at11/113+6620531..6621229hypothetical protein
LOC_Os03g12550Os.17828.1.S1_s_at11/113+6626405..6632923expressed protein
LOC_Os03g12560Os.9413.1.S1_at11/113+6633739..6635783expressed protein
LOC_Os03g12570Os.12659.1.S1_at11/113+6637038..6647835C-5 cytosine-specific DNA methylase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006812biological_processcation transport
GO:0016020cellular_componentmembrane
GO:0008324molecular_functioncation transporter activity
GO:0015562molecular_functionefflux permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34767.1.S1_at--315--151Chr03:6620072..6620096 (25 bp)
ATTATGTGGACTGAACTTGTGCATC
LOC_Os03g12530
Os.34767.1.S1_at--1064--8611Chr03:6620226..6620250 (25 bp)
TGGTGTGTAAGTGCCCTACATTGCT
LOC_Os03g12530
Os.34767.1.S1_at--1131--10671Chr03:6620303..6620327 (25 bp)
TTGCCTTTTTCAGCCCAACATCAGG
LOC_Os03g12530
Os.34767.1.S1_at--305--7991Chr03:6620386..6620410 (25 bp)
GGATGCAAAGCAATGCACCCGGCAA
LOC_Os03g12530
Os.34767.1.S1_at--158--7031Chr03:6620447..6620471 (25 bp)
GTAAAGCCTCTTCGATAGACCGGAT
LOC_Os03g12530
Os.34767.1.S1_at--70--10571Chr03:6620507..6620531 (25 bp)
TTCTTCACAGTGCAAGTACTTCTAT
LOC_Os03g12530
Os.34767.1.S1_at--117--6291Chr03:6620543..6620567 (25 bp)
GATGATTCTTCTGCAGTTGTACCCT
LOC_Os03g12530
Os.34767.1.S1_at--729--6631Chr03:6620558..6620582 (25 bp)
GTTGTACCCTTTGTCACTAGTGGTT
LOC_Os03g12530
Os.34767.1.S1_at--742--7891Chr03:6620579..6620603 (25 bp)
GGTTGTACCATTGCAGTCCGTAGTA
LOC_Os03g12530
Os.34767.1.S1_at--557--10031Chr03:6620599..6620623 (25 bp)
TAGTACGGCCGTGGGACTGTCTGTA
LOC_Os03g12530
Os.34767.1.S1_at--572--5731Chr03:6620613..6620637 (25 bp)
GACTGTCTGTAAGCCACGCATTATT
LOC_Os03g12530
Target Sequence 
ATTATGTGGACTGAACTTGTGCATCCCTCTGTTTAAGAGTTTTGTTGTGAGGAAAGTTCNAGCACAAAGGGGAAATCACG
TTCTGGATGATCTCAAGCNATTTTTTTGTTCTGAAATTCAGGTCAGTTGTAAATATTGTCTGGTTTGCTTAACAATGGTG
TGTAAGTGCCCTACATTGCTGGGAAGGTCAAGGTGTATGTGCTAAAAGAAACTCATTTTAACAAATGTGGTTTTGCCTTT
TTCAGCCCAACATCAGGCCCAGCACTCNTTCCAAATTGNAGAAAGGAAAACAGAACTGGCCCAGTAGGTGTAAACTGGAT
GCAAAGCAATGCACCCGGCAAACATCCAGCAAACAACAAGCAGTAAAAATTTACAACGTAAAGCCTCTTCGATAGACCGG
ATATTTTCATTTATTGAATTTGAAATTCTTTTGAAATTTCTTCACAGTGCAAGTACTTCTATTAGGATTGTAGGATGATT
CTTCTGCAGTTGTACCCTTTGTCACTAGTGGTTGTACCATTGCAGTCCGTAGTACGGCCGTGGGACTGTCTGTAAGCCAC
GCATTATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34767.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis